Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS04015

Experiment: Mannan from Saccharomyces cerevisiae 5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS04020 and HMPREF1058_RS04015 are separated by 364 nucleotidesHMPREF1058_RS04015 and HMPREF1058_RS04010 are separated by 134 nucleotides HMPREF1058_RS04020: HMPREF1058_RS04020 - DNA gyrase subunit A, at 132,539 to 135,106 _RS04020 HMPREF1058_RS04015: HMPREF1058_RS04015 - ATP-dependent Clp protease ATP-binding subunit, at 135,471 to 137,987 _RS04015 HMPREF1058_RS04010: HMPREF1058_RS04010 - molecular chaperone HtpG, at 138,122 to 140,167 _RS04010 Position (kb) 135 136 137 138Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 135.126 kb on - strandat 135.229 kb on - strandat 135.266 kb on + strandat 135.268 kb on + strandat 135.413 kb on + strandat 135.414 kb on - strandat 135.420 kb on - strandat 135.443 kb on + strandat 135.444 kb on - strandat 135.446 kb on + strandat 135.513 kb on + strandat 135.513 kb on + strandat 135.514 kb on - strandat 135.514 kb on - strandat 135.514 kb on - strandat 135.516 kb on - strandat 135.545 kb on + strandat 135.549 kb on + strandat 135.549 kb on + strandat 135.550 kb on - strandat 135.584 kb on - strandat 135.700 kb on - strandat 135.764 kb on + strand, within HMPREF1058_RS04015at 135.764 kb on + strand, within HMPREF1058_RS04015at 135.816 kb on - strand, within HMPREF1058_RS04015at 136.091 kb on - strand, within HMPREF1058_RS04015at 136.311 kb on + strand, within HMPREF1058_RS04015at 136.570 kb on + strand, within HMPREF1058_RS04015at 136.570 kb on + strand, within HMPREF1058_RS04015at 136.604 kb on - strand, within HMPREF1058_RS04015at 136.622 kb on + strand, within HMPREF1058_RS04015at 136.641 kb on - strand, within HMPREF1058_RS04015at 136.650 kb on + strand, within HMPREF1058_RS04015at 136.650 kb on + strand, within HMPREF1058_RS04015at 136.652 kb on + strand, within HMPREF1058_RS04015at 136.766 kb on + strand, within HMPREF1058_RS04015at 136.767 kb on - strand, within HMPREF1058_RS04015at 136.769 kb on + strand, within HMPREF1058_RS04015at 136.769 kb on + strand, within HMPREF1058_RS04015at 136.770 kb on - strand, within HMPREF1058_RS04015at 137.018 kb on - strand, within HMPREF1058_RS04015at 137.237 kb on - strand, within HMPREF1058_RS04015at 137.283 kb on + strand, within HMPREF1058_RS04015at 137.284 kb on - strand, within HMPREF1058_RS04015at 137.284 kb on - strand, within HMPREF1058_RS04015at 137.482 kb on - strand, within HMPREF1058_RS04015at 137.482 kb on - strand, within HMPREF1058_RS04015at 137.513 kb on - strand, within HMPREF1058_RS04015at 137.528 kb on + strand, within HMPREF1058_RS04015at 137.528 kb on + strand, within HMPREF1058_RS04015at 137.528 kb on + strand, within HMPREF1058_RS04015at 137.680 kb on + strand, within HMPREF1058_RS04015at 137.684 kb on - strand, within HMPREF1058_RS04015at 137.739 kb on - strandat 137.739 kb on - strandat 137.748 kb on + strandat 137.748 kb on + strandat 137.749 kb on - strandat 137.943 kb on + strandat 137.943 kb on + strandat 137.944 kb on - strandat 138.039 kb on - strandat 138.039 kb on - strandat 138.088 kb on - strandat 138.090 kb on - strandat 138.091 kb on + strandat 138.091 kb on + strandat 138.091 kb on + strandat 138.092 kb on - strandat 138.092 kb on - strandat 138.094 kb on - strandat 138.094 kb on - strandat 138.094 kb on - strandat 138.099 kb on - strandat 138.101 kb on + strandat 138.101 kb on + strandat 138.101 kb on + strandat 138.102 kb on - strandat 138.114 kb on + strandat 138.118 kb on + strandat 138.224 kb on - strandat 138.266 kb on - strandat 138.266 kb on - strandat 138.266 kb on - strandat 138.315 kb on + strandat 138.315 kb on + strandat 138.326 kb on - strandat 138.380 kb on + strand, within HMPREF1058_RS04010at 138.381 kb on - strand, within HMPREF1058_RS04010at 138.383 kb on - strand, within HMPREF1058_RS04010at 138.629 kb on - strand, within HMPREF1058_RS04010at 138.629 kb on - strand, within HMPREF1058_RS04010at 138.630 kb on + strand, within HMPREF1058_RS04010at 138.631 kb on - strand, within HMPREF1058_RS04010at 138.631 kb on - strand, within HMPREF1058_RS04010at 138.707 kb on - strand, within HMPREF1058_RS04010at 138.777 kb on + strand, within HMPREF1058_RS04010at 138.778 kb on - strand, within HMPREF1058_RS04010at 138.858 kb on + strand, within HMPREF1058_RS04010at 138.929 kb on - strand, within HMPREF1058_RS04010at 138.929 kb on - strand, within HMPREF1058_RS04010

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Per-strain Table

Position Strand Gene LocusTag Fraction Mannan from Saccharomyces cerevisiae 5 mg/ml (C)
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135,126 - +0.2
135,229 - +0.3
135,266 + -0.9
135,268 + -0.3
135,413 + +0.4
135,414 - -0.5
135,420 - -2.5
135,443 + -1.0
135,444 - +0.1
135,446 + -0.2
135,513 + -2.2
135,513 + -1.2
135,514 - -2.0
135,514 - -1.8
135,514 - +1.5
135,516 - -0.9
135,545 + -1.1
135,549 + -1.4
135,549 + -2.1
135,550 - -0.0
135,584 - -1.7
135,700 - -1.0
135,764 + HMPREF1058_RS04015 0.12 -1.6
135,764 + HMPREF1058_RS04015 0.12 -1.0
135,816 - HMPREF1058_RS04015 0.14 -2.3
136,091 - HMPREF1058_RS04015 0.25 -3.1
136,311 + HMPREF1058_RS04015 0.33 +0.8
136,570 + HMPREF1058_RS04015 0.44 +0.5
136,570 + HMPREF1058_RS04015 0.44 -2.7
136,604 - HMPREF1058_RS04015 0.45 -0.8
136,622 + HMPREF1058_RS04015 0.46 -3.1
136,641 - HMPREF1058_RS04015 0.46 +1.0
136,650 + HMPREF1058_RS04015 0.47 -3.4
136,650 + HMPREF1058_RS04015 0.47 -1.3
136,652 + HMPREF1058_RS04015 0.47 -2.9
136,766 + HMPREF1058_RS04015 0.51 -1.7
136,767 - HMPREF1058_RS04015 0.51 -2.3
136,769 + HMPREF1058_RS04015 0.52 -2.3
136,769 + HMPREF1058_RS04015 0.52 -1.1
136,770 - HMPREF1058_RS04015 0.52 -0.3
137,018 - HMPREF1058_RS04015 0.61 -2.2
137,237 - HMPREF1058_RS04015 0.70 -0.0
137,283 + HMPREF1058_RS04015 0.72 -2.1
137,284 - HMPREF1058_RS04015 0.72 +0.2
137,284 - HMPREF1058_RS04015 0.72 -0.0
137,482 - HMPREF1058_RS04015 0.80 -1.7
137,482 - HMPREF1058_RS04015 0.80 -1.0
137,513 - HMPREF1058_RS04015 0.81 -1.6
137,528 + HMPREF1058_RS04015 0.82 -1.0
137,528 + HMPREF1058_RS04015 0.82 -2.8
137,528 + HMPREF1058_RS04015 0.82 -2.9
137,680 + HMPREF1058_RS04015 0.88 +1.5
137,684 - HMPREF1058_RS04015 0.88 -0.9
137,739 - -2.7
137,739 - -2.2
137,748 + -0.5
137,748 + -2.7
137,749 - -0.3
137,943 + -1.8
137,943 + -0.3
137,944 - -1.9
138,039 - -0.7
138,039 - +0.7
138,088 - +0.9
138,090 - +0.6
138,091 + -1.3
138,091 + -0.8
138,091 + -0.6
138,092 - +0.1
138,092 - +1.3
138,094 - +0.7
138,094 - -0.6
138,094 - +1.3
138,099 - -0.7
138,101 + -0.3
138,101 + +0.2
138,101 + -0.3
138,102 - +1.5
138,114 + -0.9
138,118 + +0.9
138,224 - -1.8
138,266 - -1.2
138,266 - -1.1
138,266 - +0.8
138,315 + +1.3
138,315 + +0.3
138,326 - -0.3
138,380 + HMPREF1058_RS04010 0.13 +1.1
138,381 - HMPREF1058_RS04010 0.13 +0.3
138,383 - HMPREF1058_RS04010 0.13 +2.1
138,629 - HMPREF1058_RS04010 0.25 +0.1
138,629 - HMPREF1058_RS04010 0.25 -1.7
138,630 + HMPREF1058_RS04010 0.25 +0.8
138,631 - HMPREF1058_RS04010 0.25 -1.8
138,631 - HMPREF1058_RS04010 0.25 -0.0
138,707 - HMPREF1058_RS04010 0.29 +1.1
138,777 + HMPREF1058_RS04010 0.32 -1.7
138,778 - HMPREF1058_RS04010 0.32 +1.1
138,858 + HMPREF1058_RS04010 0.36 +0.5
138,929 - HMPREF1058_RS04010 0.39 +1.0
138,929 - HMPREF1058_RS04010 0.39 +0.3

Or see this region's nucleotide sequence