Experiment: acetate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_1468 and Ga0059261_1469 are separated by 226 nucleotides Ga0059261_1469 and Ga0059261_1470 are separated by 112 nucleotides Ga0059261_1470 and Ga0059261_1471 overlap by 1 nucleotides
Ga0059261_1468: Ga0059261_1468 - dihydroorotate oxidase A (EC 1.3.3.1), at 1,553,148 to 1,554,140
_1468
Ga0059261_1469: Ga0059261_1469 - transcriptional regulator, AraC family, at 1,554,367 to 1,555,218
_1469
Ga0059261_1470: Ga0059261_1470 - transcriptional regulator, BadM/Rrf2 family, at 1,555,331 to 1,555,750
_1470
Ga0059261_1471: Ga0059261_1471 - FeS assembly protein SufB, at 1,555,750 to 1,557,213
_1471
Position (kb)
1554
1555
1556 Strain fitness (log2 ratio)
-2
-1
0
1 at 1554.134 kb on - strand at 1554.211 kb on + strand at 1554.212 kb on - strand at 1554.258 kb on + strand at 1554.258 kb on + strand at 1554.258 kb on + strand at 1554.258 kb on + strand at 1554.258 kb on + strand at 1554.259 kb on - strand at 1554.259 kb on - strand at 1554.259 kb on - strand at 1554.388 kb on + strand at 1554.388 kb on + strand at 1554.388 kb on + strand at 1554.389 kb on - strand at 1554.389 kb on - strand at 1554.389 kb on - strand at 1554.433 kb on + strand at 1554.434 kb on - strand at 1554.434 kb on - strand at 1554.434 kb on - strand at 1554.504 kb on + strand, within Ga0059261_1469 at 1554.504 kb on + strand, within Ga0059261_1469 at 1554.505 kb on - strand, within Ga0059261_1469 at 1554.506 kb on + strand, within Ga0059261_1469 at 1554.526 kb on + strand, within Ga0059261_1469 at 1554.526 kb on + strand, within Ga0059261_1469 at 1554.526 kb on + strand, within Ga0059261_1469 at 1554.526 kb on + strand, within Ga0059261_1469 at 1554.527 kb on - strand, within Ga0059261_1469 at 1554.527 kb on - strand, within Ga0059261_1469 at 1554.527 kb on - strand, within Ga0059261_1469 at 1554.527 kb on - strand, within Ga0059261_1469 at 1554.531 kb on + strand, within Ga0059261_1469 at 1554.531 kb on + strand, within Ga0059261_1469 at 1554.531 kb on + strand, within Ga0059261_1469 at 1554.531 kb on + strand, within Ga0059261_1469 at 1554.531 kb on + strand, within Ga0059261_1469 at 1554.532 kb on - strand, within Ga0059261_1469 at 1554.532 kb on - strand, within Ga0059261_1469 at 1554.532 kb on - strand, within Ga0059261_1469 at 1554.532 kb on - strand, within Ga0059261_1469 at 1554.532 kb on - strand, within Ga0059261_1469 at 1554.772 kb on - strand, within Ga0059261_1469 at 1554.958 kb on + strand, within Ga0059261_1469 at 1554.958 kb on + strand, within Ga0059261_1469 at 1554.958 kb on + strand, within Ga0059261_1469 at 1554.959 kb on - strand, within Ga0059261_1469 at 1554.959 kb on - strand, within Ga0059261_1469 at 1554.991 kb on + strand, within Ga0059261_1469 at 1554.991 kb on + strand, within Ga0059261_1469 at 1554.992 kb on - strand, within Ga0059261_1469 at 1555.066 kb on + strand, within Ga0059261_1469 at 1555.066 kb on + strand, within Ga0059261_1469 at 1555.067 kb on - strand, within Ga0059261_1469 at 1555.212 kb on + strand at 1555.213 kb on - strand at 1555.355 kb on + strand at 1555.355 kb on + strand at 1555.355 kb on + strand at 1555.355 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate 20 mM remove 1,554,134 - +0.3 1,554,211 + +1.1 1,554,212 - -0.5 1,554,258 + +0.1 1,554,258 + -0.9 1,554,258 + -2.6 1,554,258 + +0.8 1,554,258 + -0.6 1,554,259 - -0.4 1,554,259 - +0.8 1,554,259 - +0.5 1,554,388 + +0.0 1,554,388 + -1.0 1,554,388 + -0.3 1,554,389 - +0.7 1,554,389 - -0.3 1,554,389 - -0.3 1,554,433 + -0.9 1,554,434 - +0.6 1,554,434 - +0.2 1,554,434 - +1.1 1,554,504 + Ga0059261_1469 0.16 +1.2 1,554,504 + Ga0059261_1469 0.16 +0.3 1,554,505 - Ga0059261_1469 0.16 -0.1 1,554,506 + Ga0059261_1469 0.16 -0.3 1,554,526 + Ga0059261_1469 0.19 +1.5 1,554,526 + Ga0059261_1469 0.19 +0.1 1,554,526 + Ga0059261_1469 0.19 -0.7 1,554,526 + Ga0059261_1469 0.19 -0.7 1,554,527 - Ga0059261_1469 0.19 +0.4 1,554,527 - Ga0059261_1469 0.19 -0.2 1,554,527 - Ga0059261_1469 0.19 -0.0 1,554,527 - Ga0059261_1469 0.19 -0.7 1,554,531 + Ga0059261_1469 0.19 -0.3 1,554,531 + Ga0059261_1469 0.19 +0.6 1,554,531 + Ga0059261_1469 0.19 -0.5 1,554,531 + Ga0059261_1469 0.19 -0.2 1,554,531 + Ga0059261_1469 0.19 +1.1 1,554,532 - Ga0059261_1469 0.19 +1.1 1,554,532 - Ga0059261_1469 0.19 -1.5 1,554,532 - Ga0059261_1469 0.19 +0.3 1,554,532 - Ga0059261_1469 0.19 +0.8 1,554,532 - Ga0059261_1469 0.19 +0.1 1,554,772 - Ga0059261_1469 0.48 +0.4 1,554,958 + Ga0059261_1469 0.69 +0.7 1,554,958 + Ga0059261_1469 0.69 +0.5 1,554,958 + Ga0059261_1469 0.69 +0.7 1,554,959 - Ga0059261_1469 0.69 -0.2 1,554,959 - Ga0059261_1469 0.69 +0.6 1,554,991 + Ga0059261_1469 0.73 +0.5 1,554,991 + Ga0059261_1469 0.73 +0.4 1,554,992 - Ga0059261_1469 0.73 +0.3 1,555,066 + Ga0059261_1469 0.82 -0.9 1,555,066 + Ga0059261_1469 0.82 -0.0 1,555,067 - Ga0059261_1469 0.82 +0.9 1,555,212 + -0.2 1,555,213 - +0.4 1,555,355 + -2.3 1,555,355 + -1.0 1,555,355 + -0.9 1,555,355 + -0.7
Or see this region's nucleotide sequence