Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS17260

Experiment: R2A with Cobalt chloride 0.04 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS17255 and CA265_RS17260 are separated by 92 nucleotidesCA265_RS17260 and CA265_RS17265 are separated by 13 nucleotides CA265_RS17255: CA265_RS17255 - glucosylceramidase, at 4,309,459 to 4,310,865 _RS17255 CA265_RS17260: CA265_RS17260 - RagB/SusD family nutrient uptake outer membrane protein, at 4,310,958 to 4,312,487 _RS17260 CA265_RS17265: CA265_RS17265 - SusC/RagA family TonB-linked outer membrane protein, at 4,312,501 to 4,315,671 _RS17265 Position (kb) 4310 4311 4312 4313Strain fitness (log2 ratio) -2 -1 0 1 2at 4309.973 kb on + strand, within CA265_RS17255at 4310.024 kb on - strand, within CA265_RS17255at 4310.164 kb on - strand, within CA265_RS17255at 4310.169 kb on + strand, within CA265_RS17255at 4310.243 kb on - strand, within CA265_RS17255at 4310.246 kb on + strand, within CA265_RS17255at 4310.268 kb on - strand, within CA265_RS17255at 4310.291 kb on - strand, within CA265_RS17255at 4310.312 kb on + strand, within CA265_RS17255at 4310.313 kb on - strand, within CA265_RS17255at 4310.437 kb on - strand, within CA265_RS17255at 4310.485 kb on + strand, within CA265_RS17255at 4310.519 kb on - strand, within CA265_RS17255at 4310.610 kb on + strand, within CA265_RS17255at 4310.610 kb on + strand, within CA265_RS17255at 4310.610 kb on + strand, within CA265_RS17255at 4310.716 kb on - strand, within CA265_RS17255at 4310.746 kb on + strandat 4310.746 kb on + strandat 4310.836 kb on - strandat 4310.836 kb on - strandat 4310.865 kb on + strandat 4310.869 kb on + strandat 4310.869 kb on + strandat 4310.948 kb on - strandat 4310.982 kb on - strandat 4310.982 kb on - strandat 4311.126 kb on + strand, within CA265_RS17260at 4311.127 kb on - strand, within CA265_RS17260at 4311.127 kb on - strand, within CA265_RS17260at 4311.187 kb on - strand, within CA265_RS17260at 4311.218 kb on - strand, within CA265_RS17260at 4311.276 kb on + strand, within CA265_RS17260at 4311.281 kb on - strand, within CA265_RS17260at 4311.285 kb on - strand, within CA265_RS17260at 4311.285 kb on - strand, within CA265_RS17260at 4311.305 kb on - strand, within CA265_RS17260at 4311.357 kb on + strand, within CA265_RS17260at 4311.368 kb on - strand, within CA265_RS17260at 4311.382 kb on + strand, within CA265_RS17260at 4311.383 kb on - strand, within CA265_RS17260at 4311.503 kb on + strand, within CA265_RS17260at 4311.504 kb on - strand, within CA265_RS17260at 4311.507 kb on + strand, within CA265_RS17260at 4311.518 kb on + strand, within CA265_RS17260at 4311.639 kb on - strand, within CA265_RS17260at 4311.639 kb on - strand, within CA265_RS17260at 4311.680 kb on + strand, within CA265_RS17260at 4311.717 kb on - strand, within CA265_RS17260at 4311.814 kb on - strand, within CA265_RS17260at 4311.829 kb on - strand, within CA265_RS17260at 4311.885 kb on - strand, within CA265_RS17260at 4311.928 kb on + strand, within CA265_RS17260at 4311.929 kb on - strand, within CA265_RS17260at 4311.929 kb on - strand, within CA265_RS17260at 4311.934 kb on + strand, within CA265_RS17260at 4311.934 kb on + strand, within CA265_RS17260at 4311.934 kb on + strand, within CA265_RS17260at 4311.935 kb on - strand, within CA265_RS17260at 4311.935 kb on - strand, within CA265_RS17260at 4311.970 kb on - strand, within CA265_RS17260at 4311.992 kb on + strand, within CA265_RS17260at 4311.999 kb on - strand, within CA265_RS17260at 4312.071 kb on - strand, within CA265_RS17260at 4312.072 kb on + strand, within CA265_RS17260at 4312.104 kb on - strand, within CA265_RS17260at 4312.107 kb on + strand, within CA265_RS17260at 4312.136 kb on + strand, within CA265_RS17260at 4312.150 kb on + strand, within CA265_RS17260at 4312.193 kb on + strand, within CA265_RS17260at 4312.194 kb on - strandat 4312.194 kb on - strand, within CA265_RS17260at 4312.226 kb on + strand, within CA265_RS17260at 4312.329 kb on + strand, within CA265_RS17260at 4312.375 kb on + strandat 4312.375 kb on + strandat 4312.376 kb on - strandat 4312.392 kb on - strandat 4312.568 kb on + strandat 4312.626 kb on - strandat 4312.639 kb on - strandat 4312.661 kb on + strandat 4312.662 kb on - strandat 4312.662 kb on - strandat 4312.662 kb on - strandat 4312.736 kb on - strandat 4312.764 kb on - strandat 4312.836 kb on + strand, within CA265_RS17265at 4312.837 kb on - strand, within CA265_RS17265at 4312.887 kb on + strand, within CA265_RS17265at 4312.888 kb on - strand, within CA265_RS17265at 4312.891 kb on + strand, within CA265_RS17265at 4312.969 kb on + strand, within CA265_RS17265at 4312.969 kb on + strand, within CA265_RS17265at 4312.993 kb on + strand, within CA265_RS17265at 4312.993 kb on + strand, within CA265_RS17265at 4312.993 kb on + strand, within CA265_RS17265at 4312.994 kb on - strand, within CA265_RS17265at 4313.010 kb on + strand, within CA265_RS17265at 4313.072 kb on - strand, within CA265_RS17265at 4313.134 kb on + strand, within CA265_RS17265at 4313.134 kb on + strand, within CA265_RS17265at 4313.158 kb on - strand, within CA265_RS17265at 4313.189 kb on + strand, within CA265_RS17265at 4313.244 kb on + strand, within CA265_RS17265at 4313.248 kb on - strand, within CA265_RS17265at 4313.350 kb on - strand, within CA265_RS17265at 4313.447 kb on - strand, within CA265_RS17265at 4313.452 kb on - strand, within CA265_RS17265at 4313.467 kb on - strand, within CA265_RS17265at 4313.472 kb on - strand, within CA265_RS17265at 4313.485 kb on + strand, within CA265_RS17265

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cobalt chloride 0.04 mM
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4,309,973 + CA265_RS17255 0.37 +1.0
4,310,024 - CA265_RS17255 0.40 +0.3
4,310,164 - CA265_RS17255 0.50 -1.1
4,310,169 + CA265_RS17255 0.50 -0.2
4,310,243 - CA265_RS17255 0.56 +0.4
4,310,246 + CA265_RS17255 0.56 +0.4
4,310,268 - CA265_RS17255 0.57 -0.6
4,310,291 - CA265_RS17255 0.59 -0.2
4,310,312 + CA265_RS17255 0.61 -0.6
4,310,313 - CA265_RS17255 0.61 -0.6
4,310,437 - CA265_RS17255 0.70 -0.5
4,310,485 + CA265_RS17255 0.73 -0.7
4,310,519 - CA265_RS17255 0.75 +0.4
4,310,610 + CA265_RS17255 0.82 +0.3
4,310,610 + CA265_RS17255 0.82 -0.7
4,310,610 + CA265_RS17255 0.82 -2.5
4,310,716 - CA265_RS17255 0.89 -0.5
4,310,746 + +0.2
4,310,746 + -0.6
4,310,836 - +0.1
4,310,836 - -0.5
4,310,865 + -1.0
4,310,869 + -0.4
4,310,869 + -0.8
4,310,948 - +0.8
4,310,982 - -0.2
4,310,982 - +0.4
4,311,126 + CA265_RS17260 0.11 +0.2
4,311,127 - CA265_RS17260 0.11 -1.2
4,311,127 - CA265_RS17260 0.11 -0.4
4,311,187 - CA265_RS17260 0.15 +0.3
4,311,218 - CA265_RS17260 0.17 -0.7
4,311,276 + CA265_RS17260 0.21 +0.5
4,311,281 - CA265_RS17260 0.21 -0.8
4,311,285 - CA265_RS17260 0.21 -0.7
4,311,285 - CA265_RS17260 0.21 -1.6
4,311,305 - CA265_RS17260 0.23 +0.0
4,311,357 + CA265_RS17260 0.26 -0.4
4,311,368 - CA265_RS17260 0.27 +1.2
4,311,382 + CA265_RS17260 0.28 -1.3
4,311,383 - CA265_RS17260 0.28 +0.2
4,311,503 + CA265_RS17260 0.36 -0.3
4,311,504 - CA265_RS17260 0.36 +0.8
4,311,507 + CA265_RS17260 0.36 +0.6
4,311,518 + CA265_RS17260 0.37 +0.1
4,311,639 - CA265_RS17260 0.45 -0.6
4,311,639 - CA265_RS17260 0.45 -0.0
4,311,680 + CA265_RS17260 0.47 +0.5
4,311,717 - CA265_RS17260 0.50 -0.1
4,311,814 - CA265_RS17260 0.56 -0.7
4,311,829 - CA265_RS17260 0.57 -1.2
4,311,885 - CA265_RS17260 0.61 -0.8
4,311,928 + CA265_RS17260 0.63 -1.0
4,311,929 - CA265_RS17260 0.63 -0.6
4,311,929 - CA265_RS17260 0.63 -0.6
4,311,934 + CA265_RS17260 0.64 +0.2
4,311,934 + CA265_RS17260 0.64 +0.5
4,311,934 + CA265_RS17260 0.64 -0.5
4,311,935 - CA265_RS17260 0.64 -0.5
4,311,935 - CA265_RS17260 0.64 -0.3
4,311,970 - CA265_RS17260 0.66 -0.5
4,311,992 + CA265_RS17260 0.68 -1.2
4,311,999 - CA265_RS17260 0.68 +0.4
4,312,071 - CA265_RS17260 0.73 +0.6
4,312,072 + CA265_RS17260 0.73 -0.5
4,312,104 - CA265_RS17260 0.75 +0.1
4,312,107 + CA265_RS17260 0.75 -1.4
4,312,136 + CA265_RS17260 0.77 -0.2
4,312,150 + CA265_RS17260 0.78 -0.3
4,312,193 + CA265_RS17260 0.81 +0.3
4,312,194 - +1.8
4,312,194 - CA265_RS17260 0.81 +0.3
4,312,226 + CA265_RS17260 0.83 -1.3
4,312,329 + CA265_RS17260 0.90 -0.7
4,312,375 + -0.2
4,312,375 + -0.5
4,312,376 - +0.1
4,312,392 - -0.2
4,312,568 + +0.4
4,312,626 - +0.6
4,312,639 - -1.0
4,312,661 + -0.3
4,312,662 - -0.4
4,312,662 - -0.5
4,312,662 - +0.9
4,312,736 - -1.0
4,312,764 - +0.4
4,312,836 + CA265_RS17265 0.11 +0.8
4,312,837 - CA265_RS17265 0.11 +0.1
4,312,887 + CA265_RS17265 0.12 +0.1
4,312,888 - CA265_RS17265 0.12 +0.3
4,312,891 + CA265_RS17265 0.12 +0.8
4,312,969 + CA265_RS17265 0.15 +0.3
4,312,969 + CA265_RS17265 0.15 +0.1
4,312,993 + CA265_RS17265 0.16 +0.2
4,312,993 + CA265_RS17265 0.16 +0.3
4,312,993 + CA265_RS17265 0.16 -0.4
4,312,994 - CA265_RS17265 0.16 -0.2
4,313,010 + CA265_RS17265 0.16 -0.6
4,313,072 - CA265_RS17265 0.18 -1.5
4,313,134 + CA265_RS17265 0.20 -0.4
4,313,134 + CA265_RS17265 0.20 -0.2
4,313,158 - CA265_RS17265 0.21 +0.4
4,313,189 + CA265_RS17265 0.22 +0.4
4,313,244 + CA265_RS17265 0.23 -0.4
4,313,248 - CA265_RS17265 0.24 +0.0
4,313,350 - CA265_RS17265 0.27 +0.4
4,313,447 - CA265_RS17265 0.30 -1.2
4,313,452 - CA265_RS17265 0.30 +0.3
4,313,467 - CA265_RS17265 0.30 -0.4
4,313,472 - CA265_RS17265 0.31 +0.2
4,313,485 + CA265_RS17265 0.31 -1.7

Or see this region's nucleotide sequence