Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS36280

Experiment: Thallium(I) acetate 0.01 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS36270 and BPHYT_RS36275 are separated by 386 nucleotidesBPHYT_RS36275 and BPHYT_RS36280 are separated by 1 nucleotides BPHYT_RS36270: BPHYT_RS36270 - hypothetical protein, at 63,847 to 64,425 _RS36270 BPHYT_RS36275: BPHYT_RS36275 - hypothetical protein, at 64,812 to 65,195 _RS36275 BPHYT_RS36280: BPHYT_RS36280 - type IV secretion system protein VirD4, at 65,197 to 66,885 _RS36280 Position (kb) 65 66 67Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 64.588 kb on + strandat 64.823 kb on - strandat 64.931 kb on - strand, within BPHYT_RS36275at 65.107 kb on - strand, within BPHYT_RS36275at 65.107 kb on - strand, within BPHYT_RS36275at 65.196 kb on + strandat 65.224 kb on + strandat 65.224 kb on + strandat 65.224 kb on + strandat 65.224 kb on + strandat 65.224 kb on + strandat 65.225 kb on - strandat 65.294 kb on + strandat 65.366 kb on + strand, within BPHYT_RS36280at 65.367 kb on - strand, within BPHYT_RS36280at 65.419 kb on - strand, within BPHYT_RS36280at 65.458 kb on + strandat 65.532 kb on + strand, within BPHYT_RS36280at 65.532 kb on + strand, within BPHYT_RS36280at 65.532 kb on + strand, within BPHYT_RS36280at 65.641 kb on - strand, within BPHYT_RS36280at 65.802 kb on - strand, within BPHYT_RS36280at 65.891 kb on + strand, within BPHYT_RS36280at 65.972 kb on + strandat 66.006 kb on + strand, within BPHYT_RS36280at 66.036 kb on + strand, within BPHYT_RS36280at 66.061 kb on + strand, within BPHYT_RS36280at 66.061 kb on + strand, within BPHYT_RS36280at 66.062 kb on - strand, within BPHYT_RS36280at 66.062 kb on - strand, within BPHYT_RS36280at 66.062 kb on - strand, within BPHYT_RS36280at 66.063 kb on + strand, within BPHYT_RS36280at 66.079 kb on + strand, within BPHYT_RS36280at 66.080 kb on - strand, within BPHYT_RS36280at 66.110 kb on - strand, within BPHYT_RS36280at 66.259 kb on - strand, within BPHYT_RS36280at 66.259 kb on - strand, within BPHYT_RS36280at 66.323 kb on - strand, within BPHYT_RS36280at 66.323 kb on - strand, within BPHYT_RS36280at 66.323 kb on - strand, within BPHYT_RS36280at 66.323 kb on - strand, within BPHYT_RS36280at 66.323 kb on - strand, within BPHYT_RS36280at 66.366 kb on + strand, within BPHYT_RS36280at 66.367 kb on - strand, within BPHYT_RS36280at 66.469 kb on - strand, within BPHYT_RS36280at 66.484 kb on - strand, within BPHYT_RS36280at 66.484 kb on - strand, within BPHYT_RS36280at 66.484 kb on - strand, within BPHYT_RS36280at 66.484 kb on - strand, within BPHYT_RS36280at 66.484 kb on - strand, within BPHYT_RS36280at 66.487 kb on + strand, within BPHYT_RS36280at 66.487 kb on + strand, within BPHYT_RS36280at 66.488 kb on - strand, within BPHYT_RS36280at 66.488 kb on - strandat 66.488 kb on - strand, within BPHYT_RS36280at 66.530 kb on + strand, within BPHYT_RS36280at 66.530 kb on + strand, within BPHYT_RS36280at 66.531 kb on - strand, within BPHYT_RS36280at 66.588 kb on - strand, within BPHYT_RS36280at 66.588 kb on - strand, within BPHYT_RS36280at 66.695 kb on - strand, within BPHYT_RS36280at 66.695 kb on - strand, within BPHYT_RS36280at 66.829 kb on - strandat 66.829 kb on - strandat 66.887 kb on - strandat 66.939 kb on + strandat 66.940 kb on - strandat 66.940 kb on - strandat 66.958 kb on - strandat 66.958 kb on - strandat 66.961 kb on - strandat 67.091 kb on + strandat 67.479 kb on + strandat 67.842 kb on + strandat 67.842 kb on + strandat 67.842 kb on + strandat 67.842 kb on + strandat 67.842 kb on + strandat 67.842 kb on + strandat 67.842 kb on + strandat 67.842 kb on + strandat 67.843 kb on - strandat 67.843 kb on - strandat 67.843 kb on - strandat 67.843 kb on - strandat 67.843 kb on - strandat 67.843 kb on - strandat 67.843 kb on - strandat 67.843 kb on - strandat 67.843 kb on - strandat 67.845 kb on - strandat 67.862 kb on + strandat 67.862 kb on + strandat 67.863 kb on - strandat 67.868 kb on + strandat 67.869 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.01 mg/ml
remove
64,588 + -1.4
64,823 - +0.4
64,931 - BPHYT_RS36275 0.31 -1.4
65,107 - BPHYT_RS36275 0.77 -1.3
65,107 - BPHYT_RS36275 0.77 +0.4
65,196 + -0.8
65,224 + -1.0
65,224 + -0.3
65,224 + +0.8
65,224 + -0.0
65,224 + +0.2
65,225 - +0.6
65,294 + +0.1
65,366 + BPHYT_RS36280 0.10 -2.0
65,367 - BPHYT_RS36280 0.10 -0.5
65,419 - BPHYT_RS36280 0.13 +1.9
65,458 + +1.6
65,532 + BPHYT_RS36280 0.20 +0.8
65,532 + BPHYT_RS36280 0.20 +0.2
65,532 + BPHYT_RS36280 0.20 +0.0
65,641 - BPHYT_RS36280 0.26 +0.4
65,802 - BPHYT_RS36280 0.36 +1.4
65,891 + BPHYT_RS36280 0.41 -0.8
65,972 + +2.6
66,006 + BPHYT_RS36280 0.48 -1.3
66,036 + BPHYT_RS36280 0.50 -0.0
66,061 + BPHYT_RS36280 0.51 -0.4
66,061 + BPHYT_RS36280 0.51 -0.1
66,062 - BPHYT_RS36280 0.51 -0.0
66,062 - BPHYT_RS36280 0.51 +0.4
66,062 - BPHYT_RS36280 0.51 -0.0
66,063 + BPHYT_RS36280 0.51 -0.2
66,079 + BPHYT_RS36280 0.52 +0.3
66,080 - BPHYT_RS36280 0.52 -1.0
66,110 - BPHYT_RS36280 0.54 +0.0
66,259 - BPHYT_RS36280 0.63 +1.1
66,259 - BPHYT_RS36280 0.63 +0.0
66,323 - BPHYT_RS36280 0.67 +0.1
66,323 - BPHYT_RS36280 0.67 -0.9
66,323 - BPHYT_RS36280 0.67 +0.0
66,323 - BPHYT_RS36280 0.67 -0.8
66,323 - BPHYT_RS36280 0.67 -0.3
66,366 + BPHYT_RS36280 0.69 +0.3
66,367 - BPHYT_RS36280 0.69 +0.0
66,469 - BPHYT_RS36280 0.75 -0.3
66,484 - BPHYT_RS36280 0.76 -0.6
66,484 - BPHYT_RS36280 0.76 -1.9
66,484 - BPHYT_RS36280 0.76 +0.2
66,484 - BPHYT_RS36280 0.76 -0.3
66,484 - BPHYT_RS36280 0.76 -0.0
66,487 + BPHYT_RS36280 0.76 -0.5
66,487 + BPHYT_RS36280 0.76 -0.5
66,488 - BPHYT_RS36280 0.76 +0.7
66,488 - -0.0
66,488 - BPHYT_RS36280 0.76 -0.0
66,530 + BPHYT_RS36280 0.79 -0.7
66,530 + BPHYT_RS36280 0.79 +0.0
66,531 - BPHYT_RS36280 0.79 -0.3
66,588 - BPHYT_RS36280 0.82 -0.0
66,588 - BPHYT_RS36280 0.82 +0.2
66,695 - BPHYT_RS36280 0.89 +0.3
66,695 - BPHYT_RS36280 0.89 +0.6
66,829 - +0.3
66,829 - +0.6
66,887 - -0.3
66,939 + +0.4
66,940 - +0.2
66,940 - -0.1
66,958 - -0.7
66,958 - +0.2
66,961 - +0.3
67,091 + +1.7
67,479 + +0.8
67,842 + +0.3
67,842 + +0.2
67,842 + -3.3
67,842 + -1.8
67,842 + +0.4
67,842 + +0.4
67,842 + -0.2
67,842 + -0.4
67,843 - +0.3
67,843 - +0.8
67,843 - -0.4
67,843 - +0.2
67,843 - +0.1
67,843 - -0.1
67,843 - -0.2
67,843 - -0.3
67,843 - +0.2
67,845 - +0.9
67,862 + +0.4
67,862 + -0.0
67,863 - +0.1
67,868 + -0.3
67,869 - -0.1

Or see this region's nucleotide sequence