Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32860

Experiment: Thallium(I) acetate 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS32850 and BPHYT_RS32855 are separated by 109 nucleotidesBPHYT_RS32855 and BPHYT_RS32860 are separated by 0 nucleotidesBPHYT_RS32860 and BPHYT_RS32865 are separated by 307 nucleotides BPHYT_RS32850: BPHYT_RS32850 - transcriptional regulator, at 2,951,508 to 2,951,870 _RS32850 BPHYT_RS32855: BPHYT_RS32855 - TetR family transcriptional regulator, at 2,951,980 to 2,952,474 _RS32855 BPHYT_RS32860: BPHYT_RS32860 - hypothetical protein, at 2,952,475 to 2,952,702 _RS32860 BPHYT_RS32865: BPHYT_RS32865 - choloylglycine hydrolase, at 2,953,010 to 2,954,089 _RS32865 Position (kb) 2952 2953Strain fitness (log2 ratio) -1 0 1at 2951.522 kb on + strandat 2951.555 kb on + strand, within BPHYT_RS32850at 2951.706 kb on + strand, within BPHYT_RS32850at 2952.635 kb on - strand, within BPHYT_RS32860at 2952.889 kb on - strandat 2952.999 kb on - strandat 2953.104 kb on + strandat 2953.107 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.01 mg/ml
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2,951,522 + +0.0
2,951,555 + BPHYT_RS32850 0.13 -0.0
2,951,706 + BPHYT_RS32850 0.55 +0.1
2,952,635 - BPHYT_RS32860 0.70 +0.6
2,952,889 - +0.8
2,952,999 - -0.1
2,953,104 + -0.1
2,953,107 - +0.1

Or see this region's nucleotide sequence