Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32750
Experiment: Thallium(I) acetate 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Thallium(I) acetate 0.01 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,924,782 | + | BPHYT_RS32745 | 0.28 | +0.0 | |
2,924,914 | + | BPHYT_RS32745 | 0.38 | +0.1 | |
2,924,926 | + | BPHYT_RS32745 | 0.39 | +0.0 | |
2,924,926 | + | BPHYT_RS32745 | 0.39 | +0.0 | |
2,924,927 | - | BPHYT_RS32745 | 0.39 | +0.2 | |
2,924,927 | - | BPHYT_RS32745 | 0.39 | -0.4 | |
2,924,942 | - | BPHYT_RS32745 | 0.40 | -0.2 | |
2,925,098 | - | BPHYT_RS32745 | 0.52 | -0.4 | |
2,925,478 | + | BPHYT_RS32745 | 0.80 | -0.5 | |
2,926,366 | - | BPHYT_RS32750 | 0.61 | +0.4 | |
2,926,794 | - | -0.2 | |||
2,926,794 | - | +0.1 | |||
2,927,034 | + | BPHYT_RS32755 | 0.12 | -0.2 | |
2,927,034 | + | BPHYT_RS32755 | 0.12 | -0.3 | |
2,927,035 | - | BPHYT_RS32755 | 0.12 | -0.1 | |
2,927,035 | - | BPHYT_RS32755 | 0.12 | -1.0 | |
2,927,060 | - | BPHYT_RS32755 | 0.15 | -0.9 | |
2,927,061 | + | BPHYT_RS32755 | 0.15 | +0.3 | |
2,927,061 | + | BPHYT_RS32755 | 0.15 | -0.2 | |
2,927,124 | + | BPHYT_RS32755 | 0.21 | -1.1 | |
2,927,183 | + | BPHYT_RS32755 | 0.26 | +0.5 | |
2,927,226 | + | BPHYT_RS32755 | 0.31 | -0.6 | |
2,927,578 | - | BPHYT_RS32755 | 0.64 | -0.7 | |
2,927,634 | + | BPHYT_RS32755 | 0.69 | -0.7 |
Or see this region's nucleotide sequence