Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32750

Experiment: Thallium(I) acetate 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS32745 and BPHYT_RS32750 overlap by 4 nucleotidesBPHYT_RS32750 and BPHYT_RS32755 are separated by 138 nucleotides BPHYT_RS32745: BPHYT_RS32745 - major facilitator transporter, at 2,924,397 to 2,925,755 _RS32745 BPHYT_RS32750: BPHYT_RS32750 - lipoprotein, at 2,925,752 to 2,926,765 _RS32750 BPHYT_RS32755: BPHYT_RS32755 - porin, at 2,926,904 to 2,927,956 _RS32755 Position (kb) 2925 2926 2927Strain fitness (log2 ratio) -1 0 1at 2924.782 kb on + strand, within BPHYT_RS32745at 2924.914 kb on + strand, within BPHYT_RS32745at 2924.926 kb on + strand, within BPHYT_RS32745at 2924.926 kb on + strand, within BPHYT_RS32745at 2924.927 kb on - strand, within BPHYT_RS32745at 2924.927 kb on - strand, within BPHYT_RS32745at 2924.942 kb on - strand, within BPHYT_RS32745at 2925.098 kb on - strand, within BPHYT_RS32745at 2925.478 kb on + strand, within BPHYT_RS32745at 2926.366 kb on - strand, within BPHYT_RS32750at 2926.794 kb on - strandat 2926.794 kb on - strandat 2927.034 kb on + strand, within BPHYT_RS32755at 2927.034 kb on + strand, within BPHYT_RS32755at 2927.035 kb on - strand, within BPHYT_RS32755at 2927.035 kb on - strand, within BPHYT_RS32755at 2927.060 kb on - strand, within BPHYT_RS32755at 2927.061 kb on + strand, within BPHYT_RS32755at 2927.061 kb on + strand, within BPHYT_RS32755at 2927.124 kb on + strand, within BPHYT_RS32755at 2927.183 kb on + strand, within BPHYT_RS32755at 2927.226 kb on + strand, within BPHYT_RS32755at 2927.578 kb on - strand, within BPHYT_RS32755at 2927.634 kb on + strand, within BPHYT_RS32755

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.01 mg/ml
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2,924,782 + BPHYT_RS32745 0.28 +0.0
2,924,914 + BPHYT_RS32745 0.38 +0.1
2,924,926 + BPHYT_RS32745 0.39 +0.0
2,924,926 + BPHYT_RS32745 0.39 +0.0
2,924,927 - BPHYT_RS32745 0.39 +0.2
2,924,927 - BPHYT_RS32745 0.39 -0.4
2,924,942 - BPHYT_RS32745 0.40 -0.2
2,925,098 - BPHYT_RS32745 0.52 -0.4
2,925,478 + BPHYT_RS32745 0.80 -0.5
2,926,366 - BPHYT_RS32750 0.61 +0.4
2,926,794 - -0.2
2,926,794 - +0.1
2,927,034 + BPHYT_RS32755 0.12 -0.2
2,927,034 + BPHYT_RS32755 0.12 -0.3
2,927,035 - BPHYT_RS32755 0.12 -0.1
2,927,035 - BPHYT_RS32755 0.12 -1.0
2,927,060 - BPHYT_RS32755 0.15 -0.9
2,927,061 + BPHYT_RS32755 0.15 +0.3
2,927,061 + BPHYT_RS32755 0.15 -0.2
2,927,124 + BPHYT_RS32755 0.21 -1.1
2,927,183 + BPHYT_RS32755 0.26 +0.5
2,927,226 + BPHYT_RS32755 0.31 -0.6
2,927,578 - BPHYT_RS32755 0.64 -0.7
2,927,634 + BPHYT_RS32755 0.69 -0.7

Or see this region's nucleotide sequence