Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23250

Experiment: Thallium(I) acetate 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23245 and BPHYT_RS23250 are separated by 127 nucleotidesBPHYT_RS23250 and BPHYT_RS23255 are separated by 105 nucleotides BPHYT_RS23245: BPHYT_RS23245 - phospho-2-dehydro-3-deoxyheptonate aldolase, at 779,105 to 780,223 _RS23245 BPHYT_RS23250: BPHYT_RS23250 - hypothetical protein, at 780,351 to 781,172 _RS23250 BPHYT_RS23255: BPHYT_RS23255 - TetR family transcriptional regulator, at 781,278 to 782,027 _RS23255 Position (kb) 780 781 782Strain fitness (log2 ratio) -1 0 1 2at 779.710 kb on - strand, within BPHYT_RS23245at 779.710 kb on - strand, within BPHYT_RS23245at 779.844 kb on + strand, within BPHYT_RS23245at 779.844 kb on + strand, within BPHYT_RS23245at 779.845 kb on - strand, within BPHYT_RS23245at 779.883 kb on + strand, within BPHYT_RS23245at 779.916 kb on + strand, within BPHYT_RS23245at 779.917 kb on - strand, within BPHYT_RS23245at 780.421 kb on + strandat 780.422 kb on - strandat 780.585 kb on + strand, within BPHYT_RS23250at 780.711 kb on + strand, within BPHYT_RS23250at 781.209 kb on - strandat 781.246 kb on + strandat 781.357 kb on - strand, within BPHYT_RS23255at 781.417 kb on - strand, within BPHYT_RS23255at 782.028 kb on - strandat 782.121 kb on + strandat 782.162 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.01 mg/ml
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779,710 - BPHYT_RS23245 0.54 -0.4
779,710 - BPHYT_RS23245 0.54 +1.3
779,844 + BPHYT_RS23245 0.66 -0.5
779,844 + BPHYT_RS23245 0.66 +0.0
779,845 - BPHYT_RS23245 0.66 +0.2
779,883 + BPHYT_RS23245 0.70 +0.2
779,916 + BPHYT_RS23245 0.72 +0.5
779,917 - BPHYT_RS23245 0.73 +0.5
780,421 + +0.0
780,422 - -1.4
780,585 + BPHYT_RS23250 0.28 +0.1
780,711 + BPHYT_RS23250 0.44 +1.2
781,209 - +2.6
781,246 + +0.6
781,357 - BPHYT_RS23255 0.11 +0.1
781,417 - BPHYT_RS23255 0.19 +0.8
782,028 - +0.5
782,121 + +0.3
782,162 + +0.0

Or see this region's nucleotide sequence