Experiment: Thallium(I) acetate 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS18810 and BPHYT_RS18815 overlap by 8 nucleotides BPHYT_RS18815 and BPHYT_RS18820 are separated by 92 nucleotides BPHYT_RS18820 and BPHYT_RS18825 overlap by 1 nucleotides BPHYT_RS18825 and BPHYT_RS18830 are separated by 49 nucleotides
BPHYT_RS18810: BPHYT_RS18810 - flagellar motor switch protein FliM, at 4,229,273 to 4,230,271
_RS18810
BPHYT_RS18815: BPHYT_RS18815 - flagellar motor switch protein FliN, at 4,230,264 to 4,230,728
_RS18815
BPHYT_RS18820: BPHYT_RS18820 - flagellar biosynthesis protein FliO, at 4,230,821 to 4,231,336
_RS18820
BPHYT_RS18825: BPHYT_RS18825 - flagellar biosynthesis protein FliP, at 4,231,336 to 4,232,169
_RS18825
BPHYT_RS18830: BPHYT_RS18830 - flagellar biosynthesis protein FliQ, at 4,232,219 to 4,232,488
_RS18830
Position (kb) 4230
4231
4232 Strain fitness (log2 ratio) -1
0
1
2
3 at 4229.917 kb on + strand, within BPHYT_RS18810 at 4229.917 kb on + strand, within BPHYT_RS18810 at 4229.918 kb on - strand, within BPHYT_RS18810 at 4229.918 kb on - strand, within BPHYT_RS18810 at 4229.918 kb on - strand, within BPHYT_RS18810 at 4229.918 kb on - strand, within BPHYT_RS18810 at 4229.918 kb on - strand, within BPHYT_RS18810 at 4230.207 kb on - strand at 4230.263 kb on + strand at 4230.264 kb on - strand at 4230.264 kb on - strand at 4230.692 kb on + strand at 4230.693 kb on - strand at 4230.824 kb on + strand at 4230.825 kb on - strand at 4231.115 kb on - strand, within BPHYT_RS18820 at 4231.284 kb on + strand, within BPHYT_RS18820 at 4231.284 kb on + strand, within BPHYT_RS18820 at 4231.547 kb on - strand, within BPHYT_RS18825 at 4231.759 kb on + strand, within BPHYT_RS18825 at 4231.760 kb on - strand, within BPHYT_RS18825 at 4231.761 kb on + strand, within BPHYT_RS18825 at 4231.762 kb on - strand, within BPHYT_RS18825 at 4231.762 kb on - strand, within BPHYT_RS18825 at 4231.772 kb on - strand, within BPHYT_RS18825 at 4232.083 kb on - strand, within BPHYT_RS18825 at 4232.261 kb on + strand, within BPHYT_RS18830 at 4232.261 kb on + strand, within BPHYT_RS18830 at 4232.261 kb on + strand, within BPHYT_RS18830 at 4232.261 kb on + strand, within BPHYT_RS18830 at 4232.261 kb on + strand, within BPHYT_RS18830 at 4232.261 kb on + strand, within BPHYT_RS18830 at 4232.261 kb on + strand, within BPHYT_RS18830 at 4232.261 kb on + strand at 4232.261 kb on + strand, within BPHYT_RS18830 at 4232.262 kb on - strand, within BPHYT_RS18830 at 4232.262 kb on - strand, within BPHYT_RS18830 at 4232.262 kb on - strand, within BPHYT_RS18830 at 4232.262 kb on - strand, within BPHYT_RS18830 at 4232.262 kb on - strand, within BPHYT_RS18830 at 4232.262 kb on - strand, within BPHYT_RS18830 at 4232.262 kb on - strand, within BPHYT_RS18830 at 4232.262 kb on - strand, within BPHYT_RS18830 at 4232.262 kb on - strand, within BPHYT_RS18830
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.01 mg/ml remove 4,229,917 + BPHYT_RS18810 0.64 +0.2 4,229,917 + BPHYT_RS18810 0.64 +0.6 4,229,918 - BPHYT_RS18810 0.65 +0.6 4,229,918 - BPHYT_RS18810 0.65 +1.0 4,229,918 - BPHYT_RS18810 0.65 +1.1 4,229,918 - BPHYT_RS18810 0.65 +0.8 4,229,918 - BPHYT_RS18810 0.65 +1.2 4,230,207 - +0.7 4,230,263 + -0.1 4,230,264 - +0.6 4,230,264 - +1.2 4,230,692 + -0.1 4,230,693 - +0.8 4,230,824 + +0.9 4,230,825 - +0.6 4,231,115 - BPHYT_RS18820 0.57 +0.8 4,231,284 + BPHYT_RS18820 0.90 +0.0 4,231,284 + BPHYT_RS18820 0.90 +0.9 4,231,547 - BPHYT_RS18825 0.25 +3.0 4,231,759 + BPHYT_RS18825 0.51 +1.4 4,231,760 - BPHYT_RS18825 0.51 +1.4 4,231,761 + BPHYT_RS18825 0.51 +0.6 4,231,762 - BPHYT_RS18825 0.51 +0.7 4,231,762 - BPHYT_RS18825 0.51 -1.5 4,231,772 - BPHYT_RS18825 0.52 +0.8 4,232,083 - BPHYT_RS18825 0.90 +2.4 4,232,261 + BPHYT_RS18830 0.16 +1.1 4,232,261 + BPHYT_RS18830 0.16 +0.2 4,232,261 + BPHYT_RS18830 0.16 +1.9 4,232,261 + BPHYT_RS18830 0.16 +0.1 4,232,261 + BPHYT_RS18830 0.16 -0.4 4,232,261 + BPHYT_RS18830 0.16 +0.6 4,232,261 + BPHYT_RS18830 0.16 +0.5 4,232,261 + +0.6 4,232,261 + BPHYT_RS18830 0.16 -0.4 4,232,262 - BPHYT_RS18830 0.16 +0.7 4,232,262 - BPHYT_RS18830 0.16 +0.5 4,232,262 - BPHYT_RS18830 0.16 +0.7 4,232,262 - BPHYT_RS18830 0.16 +1.1 4,232,262 - BPHYT_RS18830 0.16 +0.2 4,232,262 - BPHYT_RS18830 0.16 -0.0 4,232,262 - BPHYT_RS18830 0.16 +0.3 4,232,262 - BPHYT_RS18830 0.16 +0.9 4,232,262 - BPHYT_RS18830 0.16 +0.8
Or see this region's nucleotide sequence