Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15775

Experiment: Thallium(I) acetate 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS15770 and BPHYT_RS15775 overlap by 4 nucleotidesBPHYT_RS15775 and BPHYT_RS15780 overlap by 4 nucleotides BPHYT_RS15770: BPHYT_RS15770 - peptide ABC transporter permease, at 3,579,203 to 3,580,213 _RS15770 BPHYT_RS15775: BPHYT_RS15775 - peptide ABC transporter permease, at 3,580,210 to 3,581,076 _RS15775 BPHYT_RS15780: BPHYT_RS15780 - ABC transporter ATP-binding protein, at 3,581,073 to 3,583,256 _RS15780 Position (kb) 3580 3581 3582Strain fitness (log2 ratio) -1 0 1at 3579.452 kb on + strand, within BPHYT_RS15770at 3579.453 kb on - strand, within BPHYT_RS15770at 3579.796 kb on - strand, within BPHYT_RS15770at 3579.843 kb on - strand, within BPHYT_RS15770at 3579.931 kb on + strand, within BPHYT_RS15770at 3580.004 kb on + strand, within BPHYT_RS15770at 3580.005 kb on - strand, within BPHYT_RS15770at 3580.006 kb on + strand, within BPHYT_RS15770at 3580.007 kb on - strand, within BPHYT_RS15770at 3580.070 kb on + strand, within BPHYT_RS15770at 3580.070 kb on + strand, within BPHYT_RS15770at 3580.071 kb on - strand, within BPHYT_RS15770at 3580.136 kb on + strandat 3580.721 kb on + strand, within BPHYT_RS15775at 3580.795 kb on + strand, within BPHYT_RS15775at 3580.796 kb on - strand, within BPHYT_RS15775at 3581.809 kb on - strand, within BPHYT_RS15780at 3581.874 kb on - strand, within BPHYT_RS15780at 3581.988 kb on + strand, within BPHYT_RS15780

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.01 mg/ml
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3,579,452 + BPHYT_RS15770 0.25 +0.1
3,579,453 - BPHYT_RS15770 0.25 -0.7
3,579,796 - BPHYT_RS15770 0.59 +0.0
3,579,843 - BPHYT_RS15770 0.63 +0.5
3,579,931 + BPHYT_RS15770 0.72 +0.0
3,580,004 + BPHYT_RS15770 0.79 +0.4
3,580,005 - BPHYT_RS15770 0.79 +0.7
3,580,006 + BPHYT_RS15770 0.79 +0.7
3,580,007 - BPHYT_RS15770 0.80 -0.1
3,580,070 + BPHYT_RS15770 0.86 -0.7
3,580,070 + BPHYT_RS15770 0.86 -0.9
3,580,071 - BPHYT_RS15770 0.86 +0.1
3,580,136 + +0.5
3,580,721 + BPHYT_RS15775 0.59 +0.2
3,580,795 + BPHYT_RS15775 0.67 +1.7
3,580,796 - BPHYT_RS15775 0.68 +0.0
3,581,809 - BPHYT_RS15780 0.34 +0.9
3,581,874 - BPHYT_RS15780 0.37 -0.0
3,581,988 + BPHYT_RS15780 0.42 -0.1

Or see this region's nucleotide sequence