Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13325

Experiment: Thallium(I) acetate 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS13320 and BPHYT_RS13325 are separated by 341 nucleotidesBPHYT_RS13325 and BPHYT_RS13330 overlap by 23 nucleotidesBPHYT_RS13330 and BPHYT_RS13335 are separated by 56 nucleotides BPHYT_RS13320: BPHYT_RS13320 - allantoate amidohydrolase, at 3,041,700 to 3,042,980 _RS13320 BPHYT_RS13325: BPHYT_RS13325 - TetR family transcriptional regulator, at 3,043,322 to 3,044,032 _RS13325 BPHYT_RS13330: BPHYT_RS13330 - prevent-host-death protein, at 3,044,010 to 3,044,240 _RS13330 BPHYT_RS13335: BPHYT_RS13335 - benzoyl-CoA oxygenase, at 3,044,297 to 3,045,538 _RS13335 Position (kb) 3043 3044 3045Strain fitness (log2 ratio) -1 0 1at 3043.850 kb on - strand, within BPHYT_RS13325at 3043.875 kb on - strand, within BPHYT_RS13325at 3044.437 kb on + strand, within BPHYT_RS13335

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.01 mg/ml
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3,043,850 - BPHYT_RS13325 0.74 +1.1
3,043,875 - BPHYT_RS13325 0.78 +0.3
3,044,437 + BPHYT_RS13335 0.11 -0.5

Or see this region's nucleotide sequence