Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11220
Experiment: Thallium(I) acetate 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Thallium(I) acetate 0.01 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,551,766 | - | BPHYT_RS11215 | 0.61 | +0.4 | |
2,551,766 | - | BPHYT_RS11215 | 0.61 | +1.2 | |
2,551,766 | - | BPHYT_RS11215 | 0.61 | +1.0 | |
2,551,766 | - | BPHYT_RS11215 | 0.61 | +0.7 | |
2,551,766 | - | BPHYT_RS11215 | 0.61 | +0.6 | |
2,552,231 | + | +0.7 | |||
2,552,232 | - | -1.4 | |||
2,552,232 | - | +0.4 | |||
2,552,232 | - | +0.8 | |||
2,552,321 | - | +0.5 | |||
2,552,549 | + | -1.0 | |||
2,552,696 | - | +0.7 | |||
2,552,696 | - | +0.1 | |||
2,552,696 | - | +0.2 | |||
2,552,696 | - | +0.5 | |||
2,553,117 | - | BPHYT_RS11220 | 0.44 | +0.8 | |
2,553,178 | + | BPHYT_RS11220 | 0.50 | +0.2 | |
2,553,476 | - | BPHYT_RS11220 | 0.81 | +0.4 | |
2,553,661 | - | +0.9 | |||
2,553,661 | - | +0.8 | |||
2,553,661 | - | +0.4 | |||
2,553,661 | - | +0.3 | |||
2,553,697 | - | +0.7 | |||
2,553,703 | - | +0.9 | |||
2,553,955 | - | +0.5 | |||
2,554,100 | + | -0.5 | |||
2,554,142 | + | BPHYT_RS11225 | 0.13 | +0.3 | |
2,554,142 | + | BPHYT_RS11225 | 0.13 | -1.2 | |
2,554,311 | - | BPHYT_RS11225 | 0.30 | +0.2 | |
2,554,325 | + | BPHYT_RS11225 | 0.31 | -0.2 | |
2,554,401 | + | BPHYT_RS11225 | 0.39 | +0.3 | |
2,554,440 | - | BPHYT_RS11225 | 0.43 | +1.1 |
Or see this region's nucleotide sequence