Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08905

Experiment: Thallium(I) acetate 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS08900 and BPHYT_RS08905 are separated by 353 nucleotidesBPHYT_RS08905 and BPHYT_RS08910 are separated by 143 nucleotides BPHYT_RS08900: BPHYT_RS08900 - phosphate starvation protein PhoH, at 2,014,322 to 2,016,172 _RS08900 BPHYT_RS08905: BPHYT_RS08905 - peroxiredoxin, at 2,016,526 to 2,016,987 _RS08905 BPHYT_RS08910: BPHYT_RS08910 - polysaccharide deacetylase, at 2,017,131 to 2,018,024 _RS08910 Position (kb) 2016 2017Strain fitness (log2 ratio) -1 0 1at 2015.631 kb on + strand, within BPHYT_RS08900at 2015.631 kb on + strand, within BPHYT_RS08900at 2015.632 kb on - strand, within BPHYT_RS08900at 2016.117 kb on + strandat 2016.187 kb on + strandat 2016.200 kb on + strandat 2016.201 kb on - strandat 2016.201 kb on - strandat 2016.358 kb on + strandat 2016.380 kb on + strandat 2016.552 kb on + strandat 2016.794 kb on - strand, within BPHYT_RS08905at 2016.888 kb on - strand, within BPHYT_RS08905

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.01 mg/ml
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2,015,631 + BPHYT_RS08900 0.71 -1.4
2,015,631 + BPHYT_RS08900 0.71 -0.1
2,015,632 - BPHYT_RS08900 0.71 -0.2
2,016,117 + -0.0
2,016,187 + -0.5
2,016,200 + +0.1
2,016,201 - -0.4
2,016,201 - -0.2
2,016,358 + -0.3
2,016,380 + +0.2
2,016,552 + +0.3
2,016,794 - BPHYT_RS08905 0.58 +1.3
2,016,888 - BPHYT_RS08905 0.78 +0.4

Or see this region's nucleotide sequence