Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08340

Experiment: Thallium(I) acetate 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS08330 and BPHYT_RS08335 are separated by 67 nucleotidesBPHYT_RS08335 and BPHYT_RS08340 are separated by 185 nucleotidesBPHYT_RS08340 and BPHYT_RS08345 are separated by 412 nucleotides BPHYT_RS08330: BPHYT_RS08330 - histidine kinase, at 1,905,532 to 1,911,033 _RS08330 BPHYT_RS08335: BPHYT_RS08335 - hypothetical protein, at 1,911,101 to 1,911,478 _RS08335 BPHYT_RS08340: BPHYT_RS08340 - chemotaxis protein CheY, at 1,911,664 to 1,912,311 _RS08340 BPHYT_RS08345: BPHYT_RS08345 - hypothetical protein, at 1,912,724 to 1,913,182 _RS08345 Position (kb) 1911 1912 1913Strain fitness (log2 ratio) -1 0 1at 1911.347 kb on + strand, within BPHYT_RS08335at 1911.763 kb on + strand, within BPHYT_RS08340at 1912.295 kb on - strandat 1912.366 kb on - strandat 1912.726 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.01 mg/ml
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1,911,347 + BPHYT_RS08335 0.65 +0.1
1,911,763 + BPHYT_RS08340 0.15 +0.5
1,912,295 - -0.0
1,912,366 - +0.2
1,912,726 - +0.5

Or see this region's nucleotide sequence