Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08000

Experiment: Thallium(I) acetate 0.01 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS07995 and BPHYT_RS08000 are separated by 553 nucleotidesBPHYT_RS08000 and BPHYT_RS08005 are separated by 83 nucleotidesBPHYT_RS08005 and BPHYT_RS08010 are separated by 256 nucleotides BPHYT_RS07995: BPHYT_RS07995 - diguanylate phosphodiesterase, at 1,825,063 to 1,826,316 _RS07995 BPHYT_RS08000: BPHYT_RS08000 - antibiotic biosynthesis monooxygenase, at 1,826,870 to 1,827,160 _RS08000 BPHYT_RS08005: BPHYT_RS08005 - DNA-binding protein, at 1,827,244 to 1,827,501 _RS08005 BPHYT_RS08010: BPHYT_RS08010 - hypothetical protein, at 1,827,758 to 1,827,997 _RS08010 Position (kb) 1826 1827 1828Strain fitness (log2 ratio) -1 0 1 2at 1825.892 kb on - strand, within BPHYT_RS07995at 1826.168 kb on + strand, within BPHYT_RS07995at 1826.218 kb on - strandat 1826.218 kb on - strandat 1826.316 kb on + strandat 1826.432 kb on - strandat 1826.499 kb on - strandat 1826.530 kb on + strandat 1826.681 kb on + strandat 1826.987 kb on + strand, within BPHYT_RS08000at 1826.987 kb on + strand, within BPHYT_RS08000at 1827.098 kb on - strand, within BPHYT_RS08000at 1827.175 kb on + strandat 1827.185 kb on + strandat 1827.672 kb on + strandat 1827.673 kb on - strandat 1827.673 kb on - strandat 1828.001 kb on + strandat 1828.002 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.01 mg/ml
remove
1,825,892 - BPHYT_RS07995 0.66 +0.2
1,826,168 + BPHYT_RS07995 0.88 +0.1
1,826,218 - -0.2
1,826,218 - +0.6
1,826,316 + -0.6
1,826,432 - +0.5
1,826,499 - -0.8
1,826,530 + -0.0
1,826,681 + +0.1
1,826,987 + BPHYT_RS08000 0.40 +0.3
1,826,987 + BPHYT_RS08000 0.40 +1.8
1,827,098 - BPHYT_RS08000 0.78 +0.7
1,827,175 + +0.3
1,827,185 + -0.1
1,827,672 + +0.1
1,827,673 - -0.4
1,827,673 - -0.2
1,828,001 + -0.7
1,828,002 - +0.0

Or see this region's nucleotide sequence