Experiment: Thallium(I) acetate 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS07825 and BPHYT_RS07830 are separated by 250 nucleotides BPHYT_RS07830 and BPHYT_RS07835 are separated by 71 nucleotides BPHYT_RS07835 and BPHYT_RS07840 are separated by 93 nucleotides BPHYT_RS07840 and BPHYT_RS07845 are separated by 105 nucleotides
BPHYT_RS07825: BPHYT_RS07825 - diguanylate phosphodiesterase, at 1,784,467 to 1,785,258
_RS07825
BPHYT_RS07830: BPHYT_RS07830 - hypothetical protein, at 1,785,509 to 1,785,781
_RS07830
BPHYT_RS07835: BPHYT_RS07835 - muconolactone delta-isomerase, at 1,785,853 to 1,786,155
_RS07835
BPHYT_RS07840: BPHYT_RS07840 - muconate cycloisomerase, at 1,786,249 to 1,787,376
_RS07840
BPHYT_RS07845: BPHYT_RS07845 - LysR family transcriptional regulator, at 1,787,482 to 1,788,405
_RS07845
Position (kb)
1786
1787
1788 Strain fitness (log2 ratio)
-1
0
1 at 1785.514 kb on - strand at 1785.928 kb on - strand, within BPHYT_RS07835 at 1785.928 kb on - strand, within BPHYT_RS07835 at 1786.151 kb on - strand at 1786.151 kb on - strand at 1786.204 kb on + strand at 1786.488 kb on - strand, within BPHYT_RS07840 at 1786.888 kb on - strand, within BPHYT_RS07840 at 1786.928 kb on - strand, within BPHYT_RS07840 at 1786.928 kb on - strand, within BPHYT_RS07840 at 1787.159 kb on + strand, within BPHYT_RS07840 at 1787.745 kb on - strand, within BPHYT_RS07845 at 1788.265 kb on + strand, within BPHYT_RS07845 at 1788.266 kb on - strand, within BPHYT_RS07845
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.01 mg/ml remove 1,785,514 - +0.0 1,785,928 - BPHYT_RS07835 0.25 +0.9 1,785,928 - BPHYT_RS07835 0.25 +0.2 1,786,151 - +0.2 1,786,151 - +0.1 1,786,204 + +0.6 1,786,488 - BPHYT_RS07840 0.21 -0.2 1,786,888 - BPHYT_RS07840 0.57 +0.8 1,786,928 - BPHYT_RS07840 0.60 +0.7 1,786,928 - BPHYT_RS07840 0.60 +0.6 1,787,159 + BPHYT_RS07840 0.81 +1.2 1,787,745 - BPHYT_RS07845 0.28 -0.1 1,788,265 + BPHYT_RS07845 0.85 -0.4 1,788,266 - BPHYT_RS07845 0.85 -0.5
Or see this region's nucleotide sequence