Experiment: Thallium(I) acetate 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS05390 and BPHYT_RS05395 are separated by 39 nucleotides BPHYT_RS05395 and BPHYT_RS05400 are separated by 344 nucleotides BPHYT_RS05400 and BPHYT_RS05405 are separated by 33 nucleotides BPHYT_RS05405 and BPHYT_RS05410 are separated by 144 nucleotides
BPHYT_RS05390: BPHYT_RS05390 - isochorismatase, at 1,239,752 to 1,240,399
_RS05390
BPHYT_RS05395: BPHYT_RS05395 - hypothetical protein, at 1,240,439 to 1,240,627
_RS05395
BPHYT_RS05400: BPHYT_RS05400 - hypothetical protein, at 1,240,972 to 1,241,418
_RS05400
BPHYT_RS05405: BPHYT_RS05405 - GCN5 family acetyltransferase, at 1,241,452 to 1,241,955
_RS05405
BPHYT_RS05410: BPHYT_RS05410 - beta-lactamase, at 1,242,100 to 1,243,104
_RS05410
Position (kb)
1240
1241
1242 Strain fitness (log2 ratio)
-1
0
1 at 1240.065 kb on + strand, within BPHYT_RS05390 at 1240.249 kb on + strand, within BPHYT_RS05390 at 1240.250 kb on - strand, within BPHYT_RS05390 at 1240.367 kb on - strand at 1240.441 kb on - strand at 1240.517 kb on - strand, within BPHYT_RS05395 at 1241.499 kb on - strand at 1241.670 kb on - strand, within BPHYT_RS05405 at 1241.866 kb on + strand, within BPHYT_RS05405 at 1241.872 kb on - strand, within BPHYT_RS05405 at 1241.994 kb on + strand at 1241.995 kb on - strand at 1241.997 kb on - strand at 1242.067 kb on + strand at 1242.069 kb on + strand at 1242.161 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.01 mg/ml remove 1,240,065 + BPHYT_RS05390 0.48 -0.9 1,240,249 + BPHYT_RS05390 0.77 -0.2 1,240,250 - BPHYT_RS05390 0.77 -0.2 1,240,367 - +0.2 1,240,441 - +0.1 1,240,517 - BPHYT_RS05395 0.41 +1.1 1,241,499 - -0.5 1,241,670 - BPHYT_RS05405 0.43 +0.4 1,241,866 + BPHYT_RS05405 0.82 +0.8 1,241,872 - BPHYT_RS05405 0.83 +0.2 1,241,994 + +0.3 1,241,995 - +0.6 1,241,997 - -0.3 1,242,067 + -0.4 1,242,069 + -0.3 1,242,161 - +0.3
Or see this region's nucleotide sequence