Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_20615 and AO356_20620 are separated by 19 nucleotides AO356_20620 and AO356_20625 are separated by 138 nucleotides AO356_20625 and AO356_20630 overlap by 1 nucleotides
AO356_20615: AO356_20615 - oxidoreductase, at 4,595,771 to 4,596,778
_20615
AO356_20620: AO356_20620 - phage capsid protein, at 4,596,798 to 4,597,628
_20620
AO356_20625: AO356_20625 - terminase, at 4,597,767 to 4,599,521
_20625
AO356_20630: AO356_20630 - Presumed portal vertex protein, at 4,599,521 to 4,600,522
_20630
Position (kb)
4597
4598
4599
4600 Strain fitness (log2 ratio)
-1
0
1 at 4597.015 kb on - strand, within AO356_20620 at 4597.273 kb on + strand, within AO356_20620 at 4597.273 kb on + strand, within AO356_20620 at 4597.274 kb on - strand, within AO356_20620 at 4597.274 kb on - strand, within AO356_20620 at 4597.274 kb on - strand, within AO356_20620 at 4597.321 kb on + strand, within AO356_20620 at 4597.321 kb on + strand, within AO356_20620 at 4597.321 kb on + strand, within AO356_20620 at 4597.321 kb on + strand, within AO356_20620 at 4597.321 kb on + strand, within AO356_20620 at 4597.321 kb on + strand, within AO356_20620 at 4597.322 kb on - strand, within AO356_20620 at 4597.364 kb on + strand, within AO356_20620 at 4597.364 kb on + strand, within AO356_20620 at 4597.364 kb on + strand, within AO356_20620 at 4597.428 kb on + strand, within AO356_20620 at 4597.437 kb on + strand, within AO356_20620 at 4597.437 kb on + strand, within AO356_20620 at 4597.438 kb on - strand, within AO356_20620 at 4597.478 kb on + strand, within AO356_20620 at 4597.511 kb on - strand, within AO356_20620 at 4597.718 kb on - strand at 4597.749 kb on - strand at 4597.818 kb on + strand at 4597.982 kb on + strand, within AO356_20625 at 4597.983 kb on - strand, within AO356_20625 at 4598.278 kb on - strand, within AO356_20625 at 4598.358 kb on + strand, within AO356_20625 at 4598.359 kb on - strand, within AO356_20625 at 4598.373 kb on + strand, within AO356_20625 at 4598.374 kb on - strand, within AO356_20625 at 4598.374 kb on - strand, within AO356_20625 at 4598.431 kb on + strand, within AO356_20625 at 4598.431 kb on + strand, within AO356_20625 at 4598.431 kb on + strand, within AO356_20625 at 4598.432 kb on - strand, within AO356_20625 at 4598.432 kb on - strand, within AO356_20625 at 4598.491 kb on - strand, within AO356_20625 at 4598.491 kb on - strand, within AO356_20625 at 4598.595 kb on + strand, within AO356_20625 at 4598.595 kb on + strand, within AO356_20625 at 4598.632 kb on - strand, within AO356_20625 at 4599.516 kb on + strand at 4600.142 kb on + strand, within AO356_20630 at 4600.275 kb on + strand, within AO356_20630 at 4600.275 kb on + strand, within AO356_20630 at 4600.276 kb on - strand, within AO356_20630 at 4600.433 kb on - strand at 4600.433 kb on - strand at 4600.433 kb on - strand at 4600.434 kb on + strand at 4600.435 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 4,597,015 - AO356_20620 0.26 +0.4 4,597,273 + AO356_20620 0.57 -0.2 4,597,273 + AO356_20620 0.57 -0.7 4,597,274 - AO356_20620 0.57 -0.9 4,597,274 - AO356_20620 0.57 +0.2 4,597,274 - AO356_20620 0.57 +0.2 4,597,321 + AO356_20620 0.63 +0.0 4,597,321 + AO356_20620 0.63 -0.9 4,597,321 + AO356_20620 0.63 -0.3 4,597,321 + AO356_20620 0.63 -0.3 4,597,321 + AO356_20620 0.63 -0.3 4,597,321 + AO356_20620 0.63 +0.3 4,597,322 - AO356_20620 0.63 +0.1 4,597,364 + AO356_20620 0.68 +0.1 4,597,364 + AO356_20620 0.68 -0.2 4,597,364 + AO356_20620 0.68 -0.0 4,597,428 + AO356_20620 0.76 +0.3 4,597,437 + AO356_20620 0.77 -0.1 4,597,437 + AO356_20620 0.77 +0.1 4,597,438 - AO356_20620 0.77 +0.1 4,597,478 + AO356_20620 0.82 -0.0 4,597,511 - AO356_20620 0.86 -1.3 4,597,718 - +0.3 4,597,749 - -0.9 4,597,818 + -0.8 4,597,982 + AO356_20625 0.12 +0.3 4,597,983 - AO356_20625 0.12 +0.9 4,598,278 - AO356_20625 0.29 +0.1 4,598,358 + AO356_20625 0.34 +0.1 4,598,359 - AO356_20625 0.34 -0.7 4,598,373 + AO356_20625 0.35 +1.1 4,598,374 - AO356_20625 0.35 +1.2 4,598,374 - AO356_20625 0.35 -0.4 4,598,431 + AO356_20625 0.38 -0.1 4,598,431 + AO356_20625 0.38 +0.0 4,598,431 + AO356_20625 0.38 -1.2 4,598,432 - AO356_20625 0.38 -0.9 4,598,432 - AO356_20625 0.38 -0.1 4,598,491 - AO356_20625 0.41 -0.0 4,598,491 - AO356_20625 0.41 -0.3 4,598,595 + AO356_20625 0.47 +0.4 4,598,595 + AO356_20625 0.47 -0.3 4,598,632 - AO356_20625 0.49 -0.6 4,599,516 + -0.7 4,600,142 + AO356_20630 0.62 -1.6 4,600,275 + AO356_20630 0.75 -1.6 4,600,275 + AO356_20630 0.75 -0.3 4,600,276 - AO356_20630 0.75 -0.3 4,600,433 - -0.4 4,600,433 - +0.5 4,600,433 - +1.0 4,600,434 + +1.7 4,600,435 - -0.7
Or see this region's nucleotide sequence