Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_07740

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_07735 and AO356_07740 are separated by 299 nucleotidesAO356_07740 and AO356_07745 are separated by 54 nucleotidesAO356_07745 and AO356_07750 overlap by 4 nucleotidesAO356_07750 and AO356_07755 are separated by 230 nucleotides AO356_07735: AO356_07735 - hydroperoxidase, at 1,718,101 to 1,720,365 _07735 AO356_07740: AO356_07740 - chemotaxis protein, at 1,720,665 to 1,722,584 _07740 AO356_07745: AO356_07745 - plasmid stabilization protein, at 1,722,639 to 1,723,058 _07745 AO356_07750: AO356_07750 - plasmid stabilization protein, at 1,723,055 to 1,723,300 _07750 AO356_07755: AO356_07755 - toxin, at 1,723,531 to 1,726,080 _07755 Position (kb) 1720 1721 1722 1723Strain fitness (log2 ratio) -2 -1 0 1at 1719.726 kb on + strand, within AO356_07735at 1719.928 kb on + strand, within AO356_07735at 1719.929 kb on - strand, within AO356_07735at 1720.078 kb on - strand, within AO356_07735at 1720.274 kb on - strandat 1720.274 kb on - strandat 1720.274 kb on - strandat 1720.274 kb on - strandat 1720.274 kb on - strandat 1720.472 kb on + strandat 1720.472 kb on + strandat 1720.473 kb on - strandat 1720.603 kb on + strandat 1720.603 kb on + strandat 1720.603 kb on + strandat 1720.604 kb on - strandat 1720.604 kb on - strandat 1720.604 kb on - strandat 1720.604 kb on - strandat 1720.604 kb on - strandat 1720.625 kb on + strandat 1720.625 kb on + strandat 1720.625 kb on + strandat 1720.626 kb on - strandat 1720.670 kb on + strandat 1720.670 kb on + strandat 1720.670 kb on + strandat 1720.670 kb on + strandat 1720.671 kb on - strandat 1720.671 kb on - strandat 1720.671 kb on - strandat 1720.671 kb on - strandat 1720.671 kb on - strandat 1720.671 kb on - strandat 1720.671 kb on - strandat 1720.860 kb on + strand, within AO356_07740at 1720.860 kb on + strand, within AO356_07740at 1720.860 kb on + strand, within AO356_07740at 1720.860 kb on + strand, within AO356_07740at 1720.860 kb on + strand, within AO356_07740at 1720.860 kb on + strand, within AO356_07740at 1720.860 kb on + strand, within AO356_07740at 1720.860 kb on + strand, within AO356_07740at 1720.860 kb on + strand, within AO356_07740at 1720.861 kb on - strand, within AO356_07740at 1720.861 kb on - strand, within AO356_07740at 1720.861 kb on - strand, within AO356_07740at 1721.010 kb on + strand, within AO356_07740at 1721.011 kb on - strand, within AO356_07740at 1721.044 kb on - strand, within AO356_07740at 1721.097 kb on + strand, within AO356_07740at 1721.097 kb on + strand, within AO356_07740at 1721.226 kb on + strand, within AO356_07740at 1721.228 kb on + strand, within AO356_07740at 1721.229 kb on - strand, within AO356_07740at 1721.479 kb on - strand, within AO356_07740at 1721.479 kb on - strand, within AO356_07740at 1721.479 kb on - strand, within AO356_07740at 1722.623 kb on - strandat 1722.626 kb on + strandat 1722.626 kb on + strandat 1722.626 kb on + strandat 1722.626 kb on + strandat 1722.626 kb on + strandat 1722.626 kb on + strandat 1722.626 kb on + strandat 1722.627 kb on - strandat 1722.627 kb on - strandat 1722.627 kb on - strandat 1722.627 kb on - strandat 1722.627 kb on - strandat 1722.627 kb on - strandat 1722.627 kb on - strandat 1722.627 kb on - strandat 1722.627 kb on - strandat 1722.627 kb on - strandat 1722.692 kb on + strand, within AO356_07745at 1722.708 kb on + strand, within AO356_07745at 1722.731 kb on + strand, within AO356_07745at 1722.732 kb on - strand, within AO356_07745at 1722.802 kb on + strand, within AO356_07745at 1723.053 kb on + strandat 1723.053 kb on + strandat 1723.054 kb on - strandat 1723.054 kb on - strandat 1723.065 kb on - strandat 1723.193 kb on + strand, within AO356_07750at 1723.262 kb on + strand, within AO356_07750at 1723.263 kb on - strand, within AO356_07750at 1723.285 kb on + strandat 1723.286 kb on - strandat 1723.300 kb on + strandat 1723.301 kb on - strandat 1723.338 kb on + strandat 1723.339 kb on - strandat 1723.344 kb on - strandat 1723.344 kb on - strandat 1723.344 kb on - strandat 1723.432 kb on + strandat 1723.454 kb on + strandat 1723.479 kb on + strandat 1723.480 kb on - strandat 1723.480 kb on - strandat 1723.521 kb on + strandat 1723.521 kb on + strandat 1723.521 kb on + strandat 1723.522 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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1,719,726 + AO356_07735 0.72 +1.0
1,719,928 + AO356_07735 0.81 +0.1
1,719,929 - AO356_07735 0.81 -0.0
1,720,078 - AO356_07735 0.87 +1.7
1,720,274 - +0.3
1,720,274 - -0.6
1,720,274 - +0.7
1,720,274 - -0.4
1,720,274 - +0.3
1,720,472 + -1.8
1,720,472 + +0.3
1,720,473 - -0.7
1,720,603 + +0.5
1,720,603 + +0.1
1,720,603 + +0.0
1,720,604 - -1.3
1,720,604 - +0.3
1,720,604 - +0.7
1,720,604 - -0.5
1,720,604 - -0.8
1,720,625 + +0.1
1,720,625 + +0.6
1,720,625 + -0.7
1,720,626 - -0.4
1,720,670 + +0.8
1,720,670 + +0.3
1,720,670 + +0.5
1,720,670 + -0.1
1,720,671 - +0.3
1,720,671 - -0.3
1,720,671 - -0.2
1,720,671 - +0.5
1,720,671 - -0.3
1,720,671 - +0.4
1,720,671 - -1.3
1,720,860 + AO356_07740 0.10 +0.2
1,720,860 + AO356_07740 0.10 -0.7
1,720,860 + AO356_07740 0.10 -1.1
1,720,860 + AO356_07740 0.10 -0.1
1,720,860 + AO356_07740 0.10 +0.2
1,720,860 + AO356_07740 0.10 -1.1
1,720,860 + AO356_07740 0.10 -0.2
1,720,860 + AO356_07740 0.10 +0.1
1,720,860 + AO356_07740 0.10 -1.0
1,720,861 - AO356_07740 0.10 +0.9
1,720,861 - AO356_07740 0.10 -0.7
1,720,861 - AO356_07740 0.10 +0.4
1,721,010 + AO356_07740 0.18 +0.2
1,721,011 - AO356_07740 0.18 -0.1
1,721,044 - AO356_07740 0.20 -0.6
1,721,097 + AO356_07740 0.23 -0.3
1,721,097 + AO356_07740 0.23 -0.6
1,721,226 + AO356_07740 0.29 -0.6
1,721,228 + AO356_07740 0.29 +0.8
1,721,229 - AO356_07740 0.29 -0.8
1,721,479 - AO356_07740 0.42 -0.5
1,721,479 - AO356_07740 0.42 +0.3
1,721,479 - AO356_07740 0.42 +0.4
1,722,623 - +0.1
1,722,626 + +0.7
1,722,626 + -0.5
1,722,626 + +0.6
1,722,626 + -0.3
1,722,626 + -0.2
1,722,626 + -0.1
1,722,626 + -0.1
1,722,627 - +0.2
1,722,627 - +0.1
1,722,627 - -0.2
1,722,627 - +0.3
1,722,627 - -0.2
1,722,627 - +0.1
1,722,627 - +0.1
1,722,627 - +0.7
1,722,627 - +0.5
1,722,627 - -0.2
1,722,692 + AO356_07745 0.13 +0.6
1,722,708 + AO356_07745 0.16 +0.0
1,722,731 + AO356_07745 0.22 +0.3
1,722,732 - AO356_07745 0.22 +0.7
1,722,802 + AO356_07745 0.39 +0.3
1,723,053 + +0.2
1,723,053 + -0.2
1,723,054 - +0.1
1,723,054 - +1.3
1,723,065 - +0.7
1,723,193 + AO356_07750 0.56 +1.2
1,723,262 + AO356_07750 0.84 +0.1
1,723,263 - AO356_07750 0.85 +1.0
1,723,285 + +0.9
1,723,286 - +0.2
1,723,300 + +0.5
1,723,301 - +0.5
1,723,338 + -0.3
1,723,339 - -0.3
1,723,344 - +0.2
1,723,344 - -1.3
1,723,344 - +0.5
1,723,432 + -1.3
1,723,454 + +0.1
1,723,479 + +0.1
1,723,480 - +0.9
1,723,480 - +0.1
1,723,521 + -0.2
1,723,521 + -0.4
1,723,521 + +0.1
1,723,522 - -0.2

Or see this region's nucleotide sequence