Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000648 and ABIE53_000649 are separated by 106 nucleotides ABIE53_000649 and ABIE53_000650 overlap by 4 nucleotides ABIE53_000650 and ABIE53_000651 are separated by 265 nucleotides
ABIE53_000648: ABIE53_000648 - two-component system C4-dicarboxylate transport response regulator DctD, at 706,305 to 707,657
_000648
ABIE53_000649: ABIE53_000649 - peroxiredoxin, at 707,764 to 707,991
_000649
ABIE53_000650: ABIE53_000650 - thiol-disulfide isomerase/thioredoxin, at 707,988 to 708,299
_000650
ABIE53_000651: ABIE53_000651 - hypothetical protein, at 708,565 to 709,209
_000651
Position (kb) 707
708 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 706.816 kb on + strand, within ABIE53_000648 at 706.816 kb on + strand, within ABIE53_000648 at 706.817 kb on - strand, within ABIE53_000648 at 707.221 kb on - strand, within ABIE53_000648 at 707.605 kb on - strand at 707.605 kb on - strand at 707.605 kb on - strand at 707.623 kb on - strand at 707.660 kb on + strand at 707.660 kb on + strand at 707.660 kb on + strand at 707.660 kb on + strand at 707.661 kb on - strand at 707.661 kb on - strand at 707.766 kb on - strand at 707.828 kb on + strand, within ABIE53_000649 at 707.828 kb on + strand, within ABIE53_000649 at 707.829 kb on - strand, within ABIE53_000649 at 707.957 kb on + strand, within ABIE53_000649 at 707.958 kb on - strand, within ABIE53_000649 at 707.958 kb on - strand, within ABIE53_000649 at 707.958 kb on - strand, within ABIE53_000649 at 707.958 kb on - strand, within ABIE53_000649 at 707.969 kb on + strand at 707.969 kb on + strand at 707.969 kb on + strand at 707.969 kb on + strand at 707.969 kb on + strand at 707.969 kb on + strand at 707.969 kb on + strand at 707.969 kb on + strand at 707.969 kb on + strand at 707.969 kb on + strand at 707.969 kb on + strand at 707.970 kb on - strand at 707.970 kb on - strand at 707.970 kb on - strand at 707.970 kb on - strand at 707.970 kb on - strand at 707.970 kb on - strand at 707.970 kb on - strand at 707.970 kb on - strand at 707.970 kb on - strand at 707.970 kb on - strand at 707.970 kb on - strand at 707.970 kb on - strand at 707.970 kb on - strand at 707.970 kb on - strand at 707.985 kb on - strand at 707.985 kb on - strand at 707.985 kb on - strand at 707.985 kb on - strand at 707.985 kb on - strand at 707.985 kb on - strand at 708.035 kb on + strand, within ABIE53_000650 at 708.037 kb on + strand, within ABIE53_000650 at 708.037 kb on + strand, within ABIE53_000650 at 708.037 kb on + strand, within ABIE53_000650 at 708.037 kb on + strand, within ABIE53_000650 at 708.037 kb on + strand, within ABIE53_000650 at 708.037 kb on + strand, within ABIE53_000650 at 708.037 kb on + strand, within ABIE53_000650 at 708.037 kb on + strand, within ABIE53_000650 at 708.037 kb on + strand, within ABIE53_000650 at 708.037 kb on + strand, within ABIE53_000650 at 708.037 kb on + strand, within ABIE53_000650 at 708.037 kb on + strand, within ABIE53_000650 at 708.038 kb on - strand, within ABIE53_000650 at 708.038 kb on - strand, within ABIE53_000650 at 708.038 kb on - strand, within ABIE53_000650 at 708.038 kb on - strand, within ABIE53_000650 at 708.038 kb on - strand, within ABIE53_000650 at 708.038 kb on - strand, within ABIE53_000650 at 708.038 kb on - strand, within ABIE53_000650 at 708.038 kb on - strand, within ABIE53_000650 at 708.038 kb on - strand, within ABIE53_000650 at 708.038 kb on - strand, within ABIE53_000650 at 708.038 kb on - strand, within ABIE53_000650 at 708.038 kb on - strand, within ABIE53_000650 at 708.038 kb on - strand, within ABIE53_000650 at 708.038 kb on - strand, within ABIE53_000650 at 708.038 kb on - strand, within ABIE53_000650 at 708.038 kb on - strand, within ABIE53_000650 at 708.106 kb on + strand, within ABIE53_000650 at 708.106 kb on + strand, within ABIE53_000650 at 708.106 kb on + strand, within ABIE53_000650 at 708.107 kb on - strand, within ABIE53_000650 at 708.107 kb on - strand, within ABIE53_000650 at 708.107 kb on - strand, within ABIE53_000650 at 708.107 kb on - strand, within ABIE53_000650 at 708.107 kb on - strand, within ABIE53_000650 at 708.107 kb on - strand, within ABIE53_000650 at 708.158 kb on + strand, within ABIE53_000650 at 708.158 kb on + strand, within ABIE53_000650 at 708.158 kb on + strand, within ABIE53_000650 at 708.159 kb on - strand, within ABIE53_000650 at 708.159 kb on - strand, within ABIE53_000650 at 708.159 kb on - strand, within ABIE53_000650 at 708.159 kb on - strand, within ABIE53_000650 at 708.159 kb on - strand, within ABIE53_000650 at 708.159 kb on - strand, within ABIE53_000650 at 708.202 kb on + strand, within ABIE53_000650 at 708.202 kb on + strand, within ABIE53_000650 at 708.203 kb on - strand, within ABIE53_000650 at 708.203 kb on - strand, within ABIE53_000650 at 708.380 kb on + strand at 708.380 kb on + strand at 708.380 kb on + strand at 708.380 kb on + strand at 708.380 kb on + strand at 708.380 kb on + strand at 708.380 kb on + strand at 708.380 kb on + strand at 708.381 kb on - strand at 708.381 kb on - strand at 708.381 kb on - strand at 708.381 kb on - strand at 708.381 kb on - strand at 708.381 kb on - strand at 708.381 kb on - strand at 708.381 kb on - strand at 708.381 kb on - strand at 708.381 kb on - strand at 708.381 kb on - strand at 708.381 kb on - strand at 708.385 kb on + strand at 708.385 kb on + strand at 708.385 kb on + strand at 708.385 kb on + strand at 708.385 kb on + strand at 708.385 kb on + strand at 708.385 kb on + strand at 708.385 kb on + strand at 708.385 kb on + strand at 708.385 kb on + strand at 708.385 kb on + strand at 708.385 kb on + strand at 708.385 kb on + strand at 708.385 kb on + strand at 708.385 kb on + strand at 708.385 kb on + strand at 708.385 kb on + strand at 708.386 kb on - strand at 708.386 kb on - strand at 708.386 kb on - strand at 708.386 kb on - strand at 708.386 kb on - strand at 708.386 kb on - strand at 708.386 kb on - strand at 708.386 kb on - strand at 708.386 kb on - strand at 708.386 kb on - strand at 708.386 kb on - strand at 708.386 kb on - strand at 708.386 kb on - strand at 708.386 kb on - strand at 708.386 kb on - strand at 708.386 kb on - strand at 708.391 kb on + strand at 708.589 kb on + strand at 708.589 kb on + strand at 708.589 kb on + strand at 708.589 kb on + strand at 708.589 kb on + strand at 708.589 kb on + strand at 708.589 kb on + strand at 708.589 kb on + strand at 708.589 kb on + strand at 708.589 kb on + strand at 708.589 kb on + strand at 708.589 kb on + strand at 708.589 kb on + strand at 708.589 kb on + strand at 708.589 kb on + strand at 708.589 kb on + strand at 708.589 kb on + strand at 708.589 kb on + strand at 708.589 kb on + strand at 708.590 kb on - strand at 708.590 kb on - strand at 708.590 kb on - strand at 708.590 kb on - strand at 708.590 kb on - strand at 708.590 kb on - strand at 708.590 kb on - strand at 708.590 kb on - strand at 708.590 kb on - strand at 708.590 kb on - strand at 708.590 kb on - strand at 708.590 kb on - strand at 708.590 kb on - strand at 708.590 kb on - strand at 708.590 kb on - strand at 708.765 kb on + strand, within ABIE53_000651 at 708.766 kb on - strand, within ABIE53_000651 at 708.766 kb on - strand, within ABIE53_000651 at 708.766 kb on - strand, within ABIE53_000651 at 708.936 kb on + strand, within ABIE53_000651 at 708.936 kb on + strand, within ABIE53_000651 at 708.936 kb on + strand, within ABIE53_000651 at 708.936 kb on + strand, within ABIE53_000651 at 708.936 kb on + strand, within ABIE53_000651 at 708.937 kb on - strand, within ABIE53_000651 at 708.937 kb on - strand, within ABIE53_000651
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 706,816 + ABIE53_000648 0.38 +1.1 706,816 + ABIE53_000648 0.38 +1.7 706,817 - ABIE53_000648 0.38 -2.8 707,221 - ABIE53_000648 0.68 -3.2 707,605 - -1.4 707,605 - -1.9 707,605 - -0.6 707,623 - +0.8 707,660 + -0.2 707,660 + -2.2 707,660 + +0.6 707,660 + -0.1 707,661 - +0.6 707,661 - +0.6 707,766 - -1.9 707,828 + ABIE53_000649 0.28 -1.9 707,828 + ABIE53_000649 0.28 -0.2 707,829 - ABIE53_000649 0.29 +2.5 707,957 + ABIE53_000649 0.85 -2.1 707,958 - ABIE53_000649 0.85 -0.2 707,958 - ABIE53_000649 0.85 -1.4 707,958 - ABIE53_000649 0.85 -0.7 707,958 - ABIE53_000649 0.85 +0.5 707,969 + -1.9 707,969 + +1.5 707,969 + -1.3 707,969 + -2.1 707,969 + +1.1 707,969 + +2.1 707,969 + +1.8 707,969 + +1.1 707,969 + -1.6 707,969 + -0.2 707,969 + -0.2 707,970 - -2.3 707,970 - +0.4 707,970 - -0.9 707,970 - +0.7 707,970 - +1.1 707,970 - +2.1 707,970 - -1.2 707,970 - -0.2 707,970 - -1.4 707,970 - +0.4 707,970 - +0.8 707,970 - +0.4 707,970 - -2.0 707,970 - -0.7 707,985 - -0.5 707,985 - -0.2 707,985 - +1.7 707,985 - -1.4 707,985 - -1.0 707,985 - -0.5 708,035 + ABIE53_000650 0.15 -0.9 708,037 + ABIE53_000650 0.16 +0.6 708,037 + ABIE53_000650 0.16 +1.9 708,037 + ABIE53_000650 0.16 -0.3 708,037 + ABIE53_000650 0.16 +3.1 708,037 + ABIE53_000650 0.16 -3.3 708,037 + ABIE53_000650 0.16 -1.9 708,037 + ABIE53_000650 0.16 +1.9 708,037 + ABIE53_000650 0.16 +2.8 708,037 + ABIE53_000650 0.16 +0.1 708,037 + ABIE53_000650 0.16 +0.1 708,037 + ABIE53_000650 0.16 -1.9 708,037 + ABIE53_000650 0.16 +1.0 708,038 - ABIE53_000650 0.16 -0.9 708,038 - ABIE53_000650 0.16 -1.8 708,038 - ABIE53_000650 0.16 +0.1 708,038 - ABIE53_000650 0.16 -1.6 708,038 - ABIE53_000650 0.16 -0.4 708,038 - ABIE53_000650 0.16 -0.6 708,038 - ABIE53_000650 0.16 -0.9 708,038 - ABIE53_000650 0.16 -0.4 708,038 - ABIE53_000650 0.16 -0.5 708,038 - ABIE53_000650 0.16 -1.8 708,038 - ABIE53_000650 0.16 -1.2 708,038 - ABIE53_000650 0.16 -2.7 708,038 - ABIE53_000650 0.16 +1.2 708,038 - ABIE53_000650 0.16 -0.6 708,038 - ABIE53_000650 0.16 -1.1 708,038 - ABIE53_000650 0.16 -0.8 708,106 + ABIE53_000650 0.38 -1.3 708,106 + ABIE53_000650 0.38 -0.7 708,106 + ABIE53_000650 0.38 +0.1 708,107 - ABIE53_000650 0.38 -0.4 708,107 - ABIE53_000650 0.38 -0.2 708,107 - ABIE53_000650 0.38 +0.0 708,107 - ABIE53_000650 0.38 -0.2 708,107 - ABIE53_000650 0.38 +1.0 708,107 - ABIE53_000650 0.38 +0.1 708,158 + ABIE53_000650 0.54 -1.7 708,158 + ABIE53_000650 0.54 -1.2 708,158 + ABIE53_000650 0.54 -0.4 708,159 - ABIE53_000650 0.55 -1.7 708,159 - ABIE53_000650 0.55 +1.1 708,159 - ABIE53_000650 0.55 -0.0 708,159 - ABIE53_000650 0.55 -2.0 708,159 - ABIE53_000650 0.55 +0.6 708,159 - ABIE53_000650 0.55 -0.2 708,202 + ABIE53_000650 0.69 -2.1 708,202 + ABIE53_000650 0.69 -1.7 708,203 - ABIE53_000650 0.69 -1.0 708,203 - ABIE53_000650 0.69 -2.0 708,380 + -1.6 708,380 + -1.4 708,380 + +0.6 708,380 + -1.0 708,380 + +0.6 708,380 + -1.9 708,380 + -1.6 708,380 + +0.4 708,381 - -1.2 708,381 - +2.6 708,381 - +0.6 708,381 - +1.9 708,381 - +0.1 708,381 - +0.1 708,381 - +4.7 708,381 - +1.1 708,381 - +0.6 708,381 - +0.4 708,381 - -0.2 708,381 - -0.3 708,385 + -0.8 708,385 + +0.8 708,385 + +0.1 708,385 + -1.3 708,385 + +0.6 708,385 + +0.6 708,385 + -0.9 708,385 + +0.8 708,385 + +0.6 708,385 + -0.0 708,385 + +1.8 708,385 + +2.6 708,385 + +0.3 708,385 + +0.8 708,385 + -0.0 708,385 + +0.1 708,385 + +2.1 708,386 - +1.3 708,386 - -0.6 708,386 - +1.3 708,386 - +2.1 708,386 - -1.6 708,386 - -0.4 708,386 - -0.3 708,386 - -0.7 708,386 - -0.2 708,386 - -2.2 708,386 - -1.0 708,386 - -0.4 708,386 - -1.0 708,386 - -0.7 708,386 - -0.6 708,386 - -1.1 708,391 + -0.9 708,589 + +0.3 708,589 + -1.5 708,589 + -1.1 708,589 + +0.1 708,589 + -0.6 708,589 + -0.4 708,589 + -0.2 708,589 + +0.8 708,589 + -2.0 708,589 + +1.9 708,589 + -0.9 708,589 + +2.6 708,589 + -0.2 708,589 + -1.9 708,589 + -0.3 708,589 + -2.2 708,589 + +0.9 708,589 + -1.6 708,589 + -0.9 708,590 - +0.7 708,590 - -0.9 708,590 - +1.3 708,590 - -2.7 708,590 - +0.9 708,590 - +1.1 708,590 - -3.4 708,590 - -1.3 708,590 - -2.7 708,590 - -1.1 708,590 - -0.8 708,590 - -0.2 708,590 - -2.7 708,590 - -1.2 708,590 - +0.5 708,765 + ABIE53_000651 0.31 +1.1 708,766 - ABIE53_000651 0.31 -0.2 708,766 - ABIE53_000651 0.31 -0.9 708,766 - ABIE53_000651 0.31 +0.6 708,936 + ABIE53_000651 0.58 -1.6 708,936 + ABIE53_000651 0.58 -1.2 708,936 + ABIE53_000651 0.58 +0.7 708,936 + ABIE53_000651 0.58 +1.7 708,936 + ABIE53_000651 0.58 -1.3 708,937 - ABIE53_000651 0.58 +0.1 708,937 - ABIE53_000651 0.58 -2.0
Or see this region's nucleotide sequence