Strain Fitness in Sinorhizobium meliloti 1021 around SMc04025

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04024 and SMc04025 are separated by 102 nucleotidesSMc04025 and SMc04026 are separated by 330 nucleotides SMc04024: SMc04024 - membrane-bound lytic murein transglycosylase, at 3,022,233 to 3,023,450 SMc04024 SMc04025: SMc04025 - hypothetical protein, at 3,023,553 to 3,024,815 SMc04025 SMc04026: SMc04026 - glutamate synthase, at 3,025,146 to 3,026,603 SMc04026 Position (kb) 3023 3024 3025Strain fitness (log2 ratio) -1 0 1at 3022.666 kb on - strand, within SMc04024at 3022.695 kb on + strand, within SMc04024at 3022.695 kb on + strand, within SMc04024at 3022.840 kb on - strand, within SMc04024at 3022.840 kb on - strand, within SMc04024at 3022.884 kb on - strand, within SMc04024at 3023.002 kb on - strand, within SMc04024at 3023.166 kb on + strand, within SMc04024at 3023.417 kb on + strandat 3023.418 kb on - strandat 3023.449 kb on - strandat 3023.572 kb on + strandat 3024.813 kb on + strandat 3024.813 kb on + strandat 3024.814 kb on - strandat 3024.814 kb on - strandat 3024.875 kb on + strandat 3024.875 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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3,022,666 - SMc04024 0.36 -0.7
3,022,695 + SMc04024 0.38 -0.5
3,022,695 + SMc04024 0.38 -0.8
3,022,840 - SMc04024 0.50 -0.2
3,022,840 - SMc04024 0.50 +0.2
3,022,884 - SMc04024 0.53 -0.6
3,023,002 - SMc04024 0.63 -0.2
3,023,166 + SMc04024 0.77 -0.8
3,023,417 + -0.3
3,023,418 - -0.8
3,023,449 - -0.5
3,023,572 + +0.0
3,024,813 + +0.2
3,024,813 + +0.5
3,024,814 - +0.5
3,024,814 - +0.2
3,024,875 + +0.1
3,024,875 + -0.4

Or see this region's nucleotide sequence