Strain Fitness in Sinorhizobium meliloti 1021 around SMc00808

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00807 and SMc00808 are separated by 78 nucleotidesSMc00808 and SMc00809 are separated by 370 nucleotides SMc00807: SMc00807 - transport transmembrane protein, at 825,818 to 827,020 SMc00807 SMc00808: SMc00808 - chromate transporter, at 827,099 to 828,541 SMc00808 SMc00809: SMc00809 - signal peptide protein, at 828,912 to 829,178 SMc00809 Position (kb) 827 828 829Strain fitness (log2 ratio) -2 -1 0 1 2at 826.114 kb on + strand, within SMc00807at 826.114 kb on + strand, within SMc00807at 826.114 kb on + strand, within SMc00807at 826.115 kb on - strand, within SMc00807at 826.115 kb on - strand, within SMc00807at 826.373 kb on + strand, within SMc00807at 826.373 kb on + strand, within SMc00807at 826.373 kb on + strand, within SMc00807at 826.373 kb on + strand, within SMc00807at 826.374 kb on - strand, within SMc00807at 826.374 kb on - strand, within SMc00807at 826.447 kb on - strand, within SMc00807at 826.451 kb on + strand, within SMc00807at 826.451 kb on + strand, within SMc00807at 826.451 kb on + strand, within SMc00807at 826.596 kb on + strand, within SMc00807at 826.702 kb on + strand, within SMc00807at 826.703 kb on - strand, within SMc00807at 826.747 kb on + strand, within SMc00807at 826.747 kb on + strand, within SMc00807at 826.920 kb on + strandat 827.020 kb on + strandat 827.020 kb on + strandat 827.021 kb on - strandat 827.100 kb on + strandat 827.100 kb on + strandat 827.101 kb on - strandat 827.101 kb on - strandat 827.101 kb on - strandat 827.101 kb on - strandat 827.101 kb on - strandat 827.284 kb on - strand, within SMc00808at 827.626 kb on - strand, within SMc00808at 827.653 kb on - strand, within SMc00808at 827.653 kb on - strand, within SMc00808at 827.867 kb on - strand, within SMc00808at 828.032 kb on + strand, within SMc00808at 828.032 kb on + strand, within SMc00808at 828.032 kb on + strand, within SMc00808at 828.033 kb on - strand, within SMc00808at 828.159 kb on + strand, within SMc00808at 828.159 kb on + strand, within SMc00808at 828.159 kb on + strand, within SMc00808at 828.256 kb on + strand, within SMc00808at 828.259 kb on - strand, within SMc00808at 828.259 kb on - strand, within SMc00808at 828.259 kb on - strand, within SMc00808at 828.259 kb on - strand, within SMc00808at 828.259 kb on - strand, within SMc00808at 828.303 kb on + strand, within SMc00808at 828.303 kb on + strand, within SMc00808at 828.303 kb on + strand, within SMc00808at 828.304 kb on - strand, within SMc00808at 828.451 kb on + strandat 828.451 kb on + strandat 828.452 kb on - strandat 828.452 kb on - strandat 828.547 kb on + strandat 828.547 kb on + strandat 828.547 kb on + strandat 828.547 kb on + strandat 828.547 kb on + strandat 828.548 kb on - strandat 828.548 kb on - strandat 828.548 kb on - strandat 828.548 kb on - strandat 828.611 kb on - strandat 828.611 kb on - strandat 828.842 kb on + strandat 828.894 kb on + strandat 828.895 kb on - strandat 828.925 kb on + strandat 828.925 kb on + strandat 828.925 kb on + strandat 828.926 kb on - strandat 828.926 kb on - strandat 828.926 kb on - strandat 828.931 kb on + strandat 828.931 kb on + strandat 828.973 kb on + strand, within SMc00809at 829.021 kb on + strand, within SMc00809at 829.022 kb on - strand, within SMc00809at 829.033 kb on + strand, within SMc00809at 829.033 kb on + strand, within SMc00809at 829.033 kb on + strand, within SMc00809at 829.034 kb on - strand, within SMc00809at 829.034 kb on - strand, within SMc00809at 829.034 kb on - strand, within SMc00809at 829.034 kb on - strand, within SMc00809at 829.048 kb on + strand, within SMc00809at 829.048 kb on + strand, within SMc00809at 829.048 kb on + strand, within SMc00809at 829.048 kb on + strand, within SMc00809at 829.049 kb on - strand, within SMc00809at 829.049 kb on - strand, within SMc00809at 829.066 kb on + strand, within SMc00809at 829.206 kb on - strandat 829.234 kb on + strandat 829.234 kb on + strandat 829.299 kb on + strandat 829.300 kb on - strandat 829.369 kb on - strandat 829.370 kb on + strandat 829.371 kb on - strandat 829.371 kb on - strandat 829.371 kb on - strandat 829.371 kb on - strandat 829.382 kb on - strandat 829.476 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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826,114 + SMc00807 0.25 -0.6
826,114 + SMc00807 0.25 +2.0
826,114 + SMc00807 0.25 +0.2
826,115 - SMc00807 0.25 +0.1
826,115 - SMc00807 0.25 +0.3
826,373 + SMc00807 0.46 -0.1
826,373 + SMc00807 0.46 -0.4
826,373 + SMc00807 0.46 -0.5
826,373 + SMc00807 0.46 -0.4
826,374 - SMc00807 0.46 +0.6
826,374 - SMc00807 0.46 +0.5
826,447 - SMc00807 0.52 +0.1
826,451 + SMc00807 0.53 -0.5
826,451 + SMc00807 0.53 +0.1
826,451 + SMc00807 0.53 -0.2
826,596 + SMc00807 0.65 -0.0
826,702 + SMc00807 0.73 +0.1
826,703 - SMc00807 0.74 +0.3
826,747 + SMc00807 0.77 -0.2
826,747 + SMc00807 0.77 -1.5
826,920 + +0.3
827,020 + -0.2
827,020 + -0.3
827,021 - -0.5
827,100 + +0.7
827,100 + +0.1
827,101 - -0.5
827,101 - +0.2
827,101 - -0.3
827,101 - -0.3
827,101 - +0.9
827,284 - SMc00808 0.13 +0.7
827,626 - SMc00808 0.37 -0.1
827,653 - SMc00808 0.38 +0.1
827,653 - SMc00808 0.38 +0.6
827,867 - SMc00808 0.53 +1.5
828,032 + SMc00808 0.65 +1.2
828,032 + SMc00808 0.65 -0.0
828,032 + SMc00808 0.65 +0.7
828,033 - SMc00808 0.65 -0.2
828,159 + SMc00808 0.73 -0.1
828,159 + SMc00808 0.73 -0.1
828,159 + SMc00808 0.73 +0.1
828,256 + SMc00808 0.80 +1.2
828,259 - SMc00808 0.80 +1.2
828,259 - SMc00808 0.80 +0.3
828,259 - SMc00808 0.80 +0.1
828,259 - SMc00808 0.80 +0.4
828,259 - SMc00808 0.80 -1.6
828,303 + SMc00808 0.83 +0.3
828,303 + SMc00808 0.83 -0.2
828,303 + SMc00808 0.83 +0.4
828,304 - SMc00808 0.84 +0.5
828,451 + -0.6
828,451 + +0.4
828,452 - -1.2
828,452 - +0.2
828,547 + -0.3
828,547 + -0.7
828,547 + -0.3
828,547 + +0.4
828,547 + +1.5
828,548 - +0.8
828,548 - -0.1
828,548 - -1.4
828,548 - -0.7
828,611 - +0.9
828,611 - -0.7
828,842 + -2.1
828,894 + -0.6
828,895 - -0.5
828,925 + +0.0
828,925 + -0.1
828,925 + +0.1
828,926 - -0.2
828,926 - +0.3
828,926 - +0.1
828,931 + +0.4
828,931 + +0.7
828,973 + SMc00809 0.23 -1.0
829,021 + SMc00809 0.41 +0.8
829,022 - SMc00809 0.41 -0.4
829,033 + SMc00809 0.45 -0.2
829,033 + SMc00809 0.45 -0.3
829,033 + SMc00809 0.45 +0.1
829,034 - SMc00809 0.46 -0.4
829,034 - SMc00809 0.46 -0.3
829,034 - SMc00809 0.46 -0.3
829,034 - SMc00809 0.46 -1.1
829,048 + SMc00809 0.51 +0.3
829,048 + SMc00809 0.51 -0.9
829,048 + SMc00809 0.51 -0.4
829,048 + SMc00809 0.51 +0.5
829,049 - SMc00809 0.51 +0.1
829,049 - SMc00809 0.51 -0.3
829,066 + SMc00809 0.58 +0.2
829,206 - +0.0
829,234 + -0.3
829,234 + -0.1
829,299 + +0.4
829,300 - +0.5
829,369 - -0.0
829,370 + -0.1
829,371 - +0.2
829,371 - +0.2
829,371 - -1.5
829,371 - +0.4
829,382 - +0.3
829,476 + +0.1

Or see this region's nucleotide sequence