Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00730 and SMc00729 are separated by 299 nucleotides SMc00729 and SMc00728 are separated by 116 nucleotides
SMc00730: SMc00730 - hypothetical protein, at 2,849,603 to 2,850,394
SMc00730
SMc00729: SMc00729 - electron transfer flavoprotein BETA-subunit BETA-ETF flavoprotein small subunit, at 2,850,694 to 2,851,443
SMc00729
SMc00728: SMc00728 - electron transfer flavoprotein alpha-subunit alpha-ETF flavoprotein, at 2,851,560 to 2,852,489
SMc00728
Position (kb)
2850
2851
2852 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2849.751 kb on + strand, within SMc00730 at 2849.751 kb on + strand, within SMc00730 at 2849.751 kb on + strand, within SMc00730 at 2849.756 kb on + strand at 2849.756 kb on + strand, within SMc00730 at 2849.756 kb on + strand, within SMc00730 at 2849.757 kb on - strand, within SMc00730 at 2849.757 kb on - strand, within SMc00730 at 2849.757 kb on - strand, within SMc00730 at 2849.757 kb on - strand, within SMc00730 at 2849.757 kb on - strand, within SMc00730 at 2849.759 kb on - strand, within SMc00730 at 2849.759 kb on - strand, within SMc00730 at 2849.781 kb on - strand, within SMc00730 at 2849.837 kb on + strand, within SMc00730 at 2849.837 kb on + strand, within SMc00730 at 2849.838 kb on - strand, within SMc00730 at 2849.838 kb on - strand, within SMc00730 at 2849.948 kb on + strand, within SMc00730 at 2849.948 kb on + strand, within SMc00730 at 2849.949 kb on - strand, within SMc00730 at 2849.949 kb on - strand, within SMc00730 at 2849.949 kb on - strand, within SMc00730 at 2849.949 kb on - strand, within SMc00730 at 2850.530 kb on + strand at 2850.577 kb on + strand at 2850.651 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 2,849,751 + SMc00730 0.19 -0.2 2,849,751 + SMc00730 0.19 +0.0 2,849,751 + SMc00730 0.19 -1.0 2,849,756 + +3.7 2,849,756 + SMc00730 0.19 +0.1 2,849,756 + SMc00730 0.19 -0.1 2,849,757 - SMc00730 0.19 +0.1 2,849,757 - SMc00730 0.19 -1.0 2,849,757 - SMc00730 0.19 -0.8 2,849,757 - SMc00730 0.19 +0.0 2,849,757 - SMc00730 0.19 -0.4 2,849,759 - SMc00730 0.20 +0.5 2,849,759 - SMc00730 0.20 -0.9 2,849,781 - SMc00730 0.22 +0.5 2,849,837 + SMc00730 0.30 +0.8 2,849,837 + SMc00730 0.30 +0.3 2,849,838 - SMc00730 0.30 +1.5 2,849,838 - SMc00730 0.30 +0.0 2,849,948 + SMc00730 0.44 +1.3 2,849,948 + SMc00730 0.44 +0.3 2,849,949 - SMc00730 0.44 -1.1 2,849,949 - SMc00730 0.44 -0.1 2,849,949 - SMc00730 0.44 -0.6 2,849,949 - SMc00730 0.44 +0.2 2,850,530 + +1.1 2,850,577 + -0.0 2,850,651 + -0.7
Or see this region's nucleotide sequence