Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21586

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21585 and SM_b21586 are separated by 14 nucleotidesSM_b21586 and SM_b21587 are separated by 151 nucleotides SM_b21585: SM_b21585 - hypothetical protein, at 1,123,796 to 1,125,682 _b21585 SM_b21586: SM_b21586 - glutathione synthetase, at 1,125,697 to 1,126,743 _b21586 SM_b21587: SM_b21587 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,126,895 to 1,127,857 _b21587 Position (kb) 1125 1126 1127Strain fitness (log2 ratio) -2 -1 0 1at 1124.748 kb on - strand, within SM_b21585at 1124.756 kb on + strand, within SM_b21585at 1124.757 kb on - strand, within SM_b21585at 1124.757 kb on - strand, within SM_b21585at 1124.847 kb on - strand, within SM_b21585at 1124.847 kb on - strand, within SM_b21585at 1124.847 kb on - strand, within SM_b21585at 1125.162 kb on - strand, within SM_b21585at 1125.162 kb on - strand, within SM_b21585at 1125.670 kb on + strandat 1125.670 kb on + strandat 1125.671 kb on - strandat 1125.671 kb on - strandat 1125.671 kb on - strandat 1125.683 kb on + strandat 1125.683 kb on + strandat 1125.684 kb on - strandat 1125.742 kb on + strandat 1125.743 kb on - strandat 1125.745 kb on + strandat 1125.747 kb on + strandat 1125.748 kb on - strandat 1125.748 kb on - strandat 1125.748 kb on - strandat 1125.748 kb on - strandat 1125.799 kb on + strandat 1125.800 kb on - strandat 1125.800 kb on - strandat 1125.800 kb on - strandat 1125.800 kb on - strandat 1125.800 kb on - strandat 1125.871 kb on - strand, within SM_b21586at 1125.871 kb on - strand, within SM_b21586at 1125.954 kb on - strand, within SM_b21586at 1125.954 kb on - strand, within SM_b21586at 1125.954 kb on - strand, within SM_b21586at 1126.016 kb on - strand, within SM_b21586at 1126.016 kb on - strand, within SM_b21586at 1126.068 kb on - strand, within SM_b21586at 1126.108 kb on + strand, within SM_b21586at 1126.108 kb on + strand, within SM_b21586at 1126.109 kb on - strand, within SM_b21586at 1126.313 kb on - strand, within SM_b21586at 1126.330 kb on + strand, within SM_b21586at 1126.502 kb on + strand, within SM_b21586at 1126.502 kb on + strand, within SM_b21586at 1126.503 kb on - strand, within SM_b21586at 1126.567 kb on - strand, within SM_b21586at 1126.567 kb on - strand, within SM_b21586at 1126.568 kb on + strand, within SM_b21586at 1126.568 kb on + strand, within SM_b21586at 1126.568 kb on + strand, within SM_b21586at 1126.568 kb on + strand, within SM_b21586at 1127.261 kb on + strand, within SM_b21587at 1127.261 kb on + strand, within SM_b21587at 1127.434 kb on + strand, within SM_b21587at 1127.434 kb on + strand, within SM_b21587at 1127.434 kb on + strand, within SM_b21587at 1127.434 kb on + strand, within SM_b21587at 1127.435 kb on - strand, within SM_b21587at 1127.546 kb on + strand, within SM_b21587

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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1,124,748 - SM_b21585 0.50 -0.3
1,124,756 + SM_b21585 0.51 +1.1
1,124,757 - SM_b21585 0.51 +0.7
1,124,757 - SM_b21585 0.51 +0.7
1,124,847 - SM_b21585 0.56 -0.5
1,124,847 - SM_b21585 0.56 +0.4
1,124,847 - SM_b21585 0.56 -0.3
1,125,162 - SM_b21585 0.72 +0.0
1,125,162 - SM_b21585 0.72 +0.7
1,125,670 + -0.6
1,125,670 + -0.6
1,125,671 - -0.1
1,125,671 - -0.9
1,125,671 - -1.6
1,125,683 + -0.2
1,125,683 + -0.1
1,125,684 - -1.5
1,125,742 + +0.1
1,125,743 - +0.4
1,125,745 + -0.0
1,125,747 + +0.0
1,125,748 - -0.5
1,125,748 - -0.1
1,125,748 - +0.0
1,125,748 - +0.8
1,125,799 + -0.3
1,125,800 - +0.3
1,125,800 - +0.4
1,125,800 - +0.4
1,125,800 - -0.4
1,125,800 - -0.3
1,125,871 - SM_b21586 0.17 -0.5
1,125,871 - SM_b21586 0.17 -0.1
1,125,954 - SM_b21586 0.25 +0.1
1,125,954 - SM_b21586 0.25 -0.2
1,125,954 - SM_b21586 0.25 -0.1
1,126,016 - SM_b21586 0.30 -0.0
1,126,016 - SM_b21586 0.30 -0.5
1,126,068 - SM_b21586 0.35 +0.1
1,126,108 + SM_b21586 0.39 -0.0
1,126,108 + SM_b21586 0.39 +0.6
1,126,109 - SM_b21586 0.39 +0.6
1,126,313 - SM_b21586 0.59 -0.0
1,126,330 + SM_b21586 0.60 -0.6
1,126,502 + SM_b21586 0.77 -0.5
1,126,502 + SM_b21586 0.77 -0.1
1,126,503 - SM_b21586 0.77 -0.6
1,126,567 - SM_b21586 0.83 -0.5
1,126,567 - SM_b21586 0.83 -0.0
1,126,568 + SM_b21586 0.83 -0.5
1,126,568 + SM_b21586 0.83 -0.1
1,126,568 + SM_b21586 0.83 -0.1
1,126,568 + SM_b21586 0.83 +0.1
1,127,261 + SM_b21587 0.38 +0.2
1,127,261 + SM_b21587 0.38 -1.5
1,127,434 + SM_b21587 0.56 -1.1
1,127,434 + SM_b21587 0.56 -2.5
1,127,434 + SM_b21587 0.56 -1.3
1,127,434 + SM_b21587 0.56 -0.3
1,127,435 - SM_b21587 0.56 -0.1
1,127,546 + SM_b21587 0.68 -0.6

Or see this region's nucleotide sequence