Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21176 and SM_b21177 are separated by 91 nucleotides SM_b21177 and SM_b21178 are separated by 166 nucleotides
SM_b21176: SM_b21176 - phosphate uptake ABC transporter substrate-binding protein precursor, at 922,274 to 923,179
_b21176
SM_b21177: SM_b21177 - phosphate uptake ABC transporter ATP-binding protein, at 923,271 to 924,110
_b21177
SM_b21178: SM_b21178 - membrane protein, methyltransferase, at 924,277 to 925,530
_b21178
Position (kb) 923
924
925 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 922.476 kb on - strand, within SM_b21176 at 922.796 kb on - strand, within SM_b21176 at 922.899 kb on + strand, within SM_b21176 at 922.899 kb on + strand, within SM_b21176 at 922.899 kb on + strand, within SM_b21176 at 922.900 kb on - strand, within SM_b21176 at 922.978 kb on - strand, within SM_b21176 at 923.173 kb on + strand at 923.390 kb on - strand, within SM_b21177 at 923.390 kb on - strand, within SM_b21177 at 923.479 kb on + strand, within SM_b21177 at 923.479 kb on + strand, within SM_b21177 at 923.480 kb on - strand, within SM_b21177 at 923.501 kb on + strand, within SM_b21177 at 923.502 kb on - strand, within SM_b21177 at 923.781 kb on + strand, within SM_b21177 at 923.922 kb on + strand, within SM_b21177 at 923.923 kb on - strand, within SM_b21177 at 923.971 kb on - strand, within SM_b21177 at 924.014 kb on + strand, within SM_b21177 at 924.014 kb on + strand, within SM_b21177 at 924.040 kb on - strand at 924.091 kb on - strand at 924.590 kb on + strand, within SM_b21178 at 924.623 kb on + strand, within SM_b21178 at 924.645 kb on + strand, within SM_b21178 at 924.734 kb on + strand, within SM_b21178 at 924.735 kb on - strand, within SM_b21178 at 924.735 kb on - strand, within SM_b21178 at 924.792 kb on - strand, within SM_b21178 at 924.792 kb on - strand, within SM_b21178 at 924.792 kb on - strand, within SM_b21178 at 924.792 kb on - strand, within SM_b21178 at 924.792 kb on - strand, within SM_b21178 at 924.792 kb on - strand, within SM_b21178 at 924.792 kb on - strand, within SM_b21178 at 924.860 kb on + strand, within SM_b21178 at 924.860 kb on + strand, within SM_b21178 at 924.860 kb on + strand, within SM_b21178 at 924.860 kb on + strand, within SM_b21178
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 922,476 - SM_b21176 0.22 -3.4 922,796 - SM_b21176 0.58 -4.3 922,899 + SM_b21176 0.69 +0.8 922,899 + SM_b21176 0.69 -4.1 922,899 + SM_b21176 0.69 -3.8 922,900 - SM_b21176 0.69 -4.0 922,978 - SM_b21176 0.78 -2.5 923,173 + -4.0 923,390 - SM_b21177 0.14 -2.4 923,390 - SM_b21177 0.14 -2.7 923,479 + SM_b21177 0.25 -4.6 923,479 + SM_b21177 0.25 -4.3 923,480 - SM_b21177 0.25 -3.9 923,501 + SM_b21177 0.27 -1.0 923,502 - SM_b21177 0.28 -6.4 923,781 + SM_b21177 0.61 -2.9 923,922 + SM_b21177 0.78 -1.6 923,923 - SM_b21177 0.78 -2.9 923,971 - SM_b21177 0.83 -1.2 924,014 + SM_b21177 0.88 -2.2 924,014 + SM_b21177 0.88 -2.5 924,040 - -4.0 924,091 - -2.3 924,590 + SM_b21178 0.25 -0.2 924,623 + SM_b21178 0.28 -0.7 924,645 + SM_b21178 0.29 -0.7 924,734 + SM_b21178 0.36 -0.6 924,735 - SM_b21178 0.37 +0.3 924,735 - SM_b21178 0.37 +1.2 924,792 - SM_b21178 0.41 -0.5 924,792 - SM_b21178 0.41 -1.2 924,792 - SM_b21178 0.41 -0.8 924,792 - SM_b21178 0.41 -0.0 924,792 - SM_b21178 0.41 -1.0 924,792 - SM_b21178 0.41 -0.9 924,792 - SM_b21178 0.41 +0.1 924,860 + SM_b21178 0.46 -0.4 924,860 + SM_b21178 0.46 -0.6 924,860 + SM_b21178 0.46 +0.4 924,860 + SM_b21178 0.46 -0.1
Or see this region's nucleotide sequence