Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS28290 and RR42_RS28295 are separated by 88 nucleotides RR42_RS28295 and RR42_RS28300 overlap by 4 nucleotides
RR42_RS28290: RR42_RS28290 - DNA-binding protein, at 1,707,565 to 1,708,161
_RS28290
RR42_RS28295: RR42_RS28295 - 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) (from data) , at 1,708,250 to 1,709,452
_RS28295
RR42_RS28300: RR42_RS28300 - L-threonine 3-dehydrogenase (EC 1.1.1.103) (from data) , at 1,709,449 to 1,710,423
_RS28300
Position (kb)
1708
1709
1710 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1707.353 kb on + strand at 1707.354 kb on - strand at 1707.360 kb on - strand at 1707.360 kb on - strand at 1707.374 kb on - strand at 1707.479 kb on - strand at 1707.575 kb on + strand at 1707.794 kb on + strand, within RR42_RS28290 at 1707.794 kb on + strand, within RR42_RS28290 at 1707.794 kb on + strand, within RR42_RS28290 at 1707.795 kb on - strand, within RR42_RS28290 at 1708.040 kb on - strand, within RR42_RS28290 at 1708.271 kb on + strand at 1708.272 kb on - strand at 1708.272 kb on - strand at 1708.360 kb on + strand at 1708.360 kb on + strand at 1708.409 kb on + strand, within RR42_RS28295 at 1708.409 kb on + strand, within RR42_RS28295 at 1708.410 kb on - strand, within RR42_RS28295 at 1708.498 kb on + strand, within RR42_RS28295 at 1708.499 kb on - strand, within RR42_RS28295 at 1708.499 kb on - strand, within RR42_RS28295 at 1708.508 kb on - strand, within RR42_RS28295 at 1708.693 kb on + strand, within RR42_RS28295 at 1708.693 kb on + strand, within RR42_RS28295 at 1709.014 kb on + strand, within RR42_RS28295 at 1709.140 kb on + strand, within RR42_RS28295 at 1709.177 kb on + strand, within RR42_RS28295 at 1709.252 kb on + strand, within RR42_RS28295 at 1709.306 kb on + strand, within RR42_RS28295 at 1709.306 kb on + strand, within RR42_RS28295 at 1709.306 kb on + strand, within RR42_RS28295 at 1709.307 kb on - strand, within RR42_RS28295 at 1709.307 kb on - strand, within RR42_RS28295 at 1709.307 kb on - strand, within RR42_RS28295 at 1709.324 kb on + strand, within RR42_RS28295 at 1709.469 kb on - strand at 1709.530 kb on + strand at 1709.665 kb on + strand, within RR42_RS28300 at 1709.666 kb on - strand, within RR42_RS28300 at 1709.786 kb on + strand, within RR42_RS28300 at 1709.787 kb on - strand, within RR42_RS28300 at 1709.787 kb on - strand, within RR42_RS28300 at 1709.787 kb on - strand, within RR42_RS28300 at 1709.787 kb on - strand, within RR42_RS28300 at 1710.049 kb on + strand, within RR42_RS28300 at 1710.049 kb on + strand, within RR42_RS28300 at 1710.050 kb on - strand, within RR42_RS28300 at 1710.050 kb on - strand, within RR42_RS28300 at 1710.050 kb on - strand, within RR42_RS28300 at 1710.091 kb on + strand, within RR42_RS28300 at 1710.091 kb on + strand, within RR42_RS28300 at 1710.091 kb on + strand, within RR42_RS28300 at 1710.091 kb on + strand, within RR42_RS28300 at 1710.092 kb on - strand, within RR42_RS28300 at 1710.092 kb on - strand, within RR42_RS28300 at 1710.167 kb on - strand, within RR42_RS28300 at 1710.248 kb on - strand, within RR42_RS28300
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 1,707,353 + -1.4 1,707,354 - +0.5 1,707,360 - +0.6 1,707,360 - -0.1 1,707,374 - -1.2 1,707,479 - -0.1 1,707,575 + -0.4 1,707,794 + RR42_RS28290 0.38 -0.4 1,707,794 + RR42_RS28290 0.38 -0.6 1,707,794 + RR42_RS28290 0.38 -0.2 1,707,795 - RR42_RS28290 0.39 -0.0 1,708,040 - RR42_RS28290 0.80 -1.7 1,708,271 + -2.0 1,708,272 - -0.1 1,708,272 - -0.1 1,708,360 + +0.1 1,708,360 + -0.8 1,708,409 + RR42_RS28295 0.13 +0.4 1,708,409 + RR42_RS28295 0.13 +0.4 1,708,410 - RR42_RS28295 0.13 -0.2 1,708,498 + RR42_RS28295 0.21 +0.8 1,708,499 - RR42_RS28295 0.21 -0.2 1,708,499 - RR42_RS28295 0.21 +1.6 1,708,508 - RR42_RS28295 0.21 +0.5 1,708,693 + RR42_RS28295 0.37 +0.2 1,708,693 + RR42_RS28295 0.37 +0.6 1,709,014 + RR42_RS28295 0.64 +0.2 1,709,140 + RR42_RS28295 0.74 +1.8 1,709,177 + RR42_RS28295 0.77 +0.6 1,709,252 + RR42_RS28295 0.83 +0.4 1,709,306 + RR42_RS28295 0.88 +1.0 1,709,306 + RR42_RS28295 0.88 +0.1 1,709,306 + RR42_RS28295 0.88 -1.1 1,709,307 - RR42_RS28295 0.88 +0.4 1,709,307 - RR42_RS28295 0.88 +0.2 1,709,307 - RR42_RS28295 0.88 -1.1 1,709,324 + RR42_RS28295 0.89 -0.2 1,709,469 - -1.4 1,709,530 + +0.6 1,709,665 + RR42_RS28300 0.22 +0.8 1,709,666 - RR42_RS28300 0.22 -0.6 1,709,786 + RR42_RS28300 0.35 +1.2 1,709,787 - RR42_RS28300 0.35 -2.4 1,709,787 - RR42_RS28300 0.35 +0.5 1,709,787 - RR42_RS28300 0.35 -0.4 1,709,787 - RR42_RS28300 0.35 +1.1 1,710,049 + RR42_RS28300 0.62 +0.0 1,710,049 + RR42_RS28300 0.62 +0.2 1,710,050 - RR42_RS28300 0.62 -0.2 1,710,050 - RR42_RS28300 0.62 -0.1 1,710,050 - RR42_RS28300 0.62 -1.5 1,710,091 + RR42_RS28300 0.66 +0.2 1,710,091 + RR42_RS28300 0.66 +0.0 1,710,091 + RR42_RS28300 0.66 -0.4 1,710,091 + RR42_RS28300 0.66 +0.4 1,710,092 - RR42_RS28300 0.66 +0.4 1,710,092 - RR42_RS28300 0.66 +0.4 1,710,167 - RR42_RS28300 0.74 +0.6 1,710,248 - RR42_RS28300 0.82 -1.0
Or see this region's nucleotide sequence