Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24270 and RR42_RS24275 are separated by 108 nucleotides RR42_RS24275 and RR42_RS24280 overlap by 4 nucleotides
RR42_RS24270: RR42_RS24270 - hypothetical protein, at 772,514 to 773,482
_RS24270
RR42_RS24275: RR42_RS24275 - hypothetical protein, at 773,591 to 774,478
_RS24275
RR42_RS24280: RR42_RS24280 - gentisate 1,2-dioxygenase, at 774,475 to 775,524
_RS24280
Position (kb) 773
774
775 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 772.755 kb on + strand, within RR42_RS24270 at 772.853 kb on - strand, within RR42_RS24270 at 772.938 kb on + strand, within RR42_RS24270 at 772.938 kb on + strand, within RR42_RS24270 at 772.939 kb on - strand at 773.164 kb on - strand, within RR42_RS24270 at 773.164 kb on - strand, within RR42_RS24270 at 773.164 kb on - strand, within RR42_RS24270 at 773.230 kb on - strand, within RR42_RS24270 at 773.469 kb on - strand at 773.504 kb on - strand at 773.592 kb on + strand at 773.593 kb on - strand at 773.595 kb on + strand at 773.595 kb on + strand at 773.595 kb on + strand at 773.596 kb on - strand at 773.675 kb on - strand at 773.834 kb on + strand, within RR42_RS24275 at 773.834 kb on + strand, within RR42_RS24275 at 773.834 kb on + strand, within RR42_RS24275 at 773.835 kb on - strand, within RR42_RS24275 at 774.000 kb on + strand, within RR42_RS24275 at 774.000 kb on + strand, within RR42_RS24275 at 774.243 kb on - strand, within RR42_RS24275 at 774.243 kb on - strand, within RR42_RS24275 at 774.243 kb on - strand, within RR42_RS24275 at 774.243 kb on - strand, within RR42_RS24275 at 774.401 kb on + strand at 774.402 kb on - strand at 774.420 kb on + strand at 774.420 kb on + strand at 774.420 kb on + strand at 774.421 kb on - strand at 774.421 kb on - strand at 774.493 kb on - strand at 774.668 kb on + strand, within RR42_RS24280 at 774.669 kb on - strand, within RR42_RS24280 at 774.671 kb on + strand, within RR42_RS24280 at 774.803 kb on + strand, within RR42_RS24280 at 774.803 kb on + strand, within RR42_RS24280 at 774.803 kb on + strand, within RR42_RS24280 at 774.803 kb on + strand, within RR42_RS24280 at 774.863 kb on + strand, within RR42_RS24280 at 775.257 kb on + strand, within RR42_RS24280 at 775.257 kb on + strand, within RR42_RS24280 at 775.458 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 772,755 + RR42_RS24270 0.25 -0.4 772,853 - RR42_RS24270 0.35 +0.3 772,938 + RR42_RS24270 0.44 +0.4 772,938 + RR42_RS24270 0.44 +0.4 772,939 - +1.3 773,164 - RR42_RS24270 0.67 +0.5 773,164 - RR42_RS24270 0.67 +0.4 773,164 - RR42_RS24270 0.67 +0.4 773,230 - RR42_RS24270 0.74 -0.1 773,469 - -0.6 773,504 - +0.1 773,592 + -0.3 773,593 - -0.9 773,595 + +0.4 773,595 + +0.2 773,595 + -1.7 773,596 - -0.2 773,675 - +1.3 773,834 + RR42_RS24275 0.27 -0.9 773,834 + RR42_RS24275 0.27 -0.0 773,834 + RR42_RS24275 0.27 -2.2 773,835 - RR42_RS24275 0.27 +0.3 774,000 + RR42_RS24275 0.46 -0.4 774,000 + RR42_RS24275 0.46 +0.5 774,243 - RR42_RS24275 0.73 +1.6 774,243 - RR42_RS24275 0.73 +0.9 774,243 - RR42_RS24275 0.73 +0.9 774,243 - RR42_RS24275 0.73 +1.0 774,401 + -1.0 774,402 - -2.2 774,420 + -2.8 774,420 + +1.0 774,420 + +0.0 774,421 - +0.5 774,421 - -1.6 774,493 - -0.8 774,668 + RR42_RS24280 0.18 -0.1 774,669 - RR42_RS24280 0.18 -0.8 774,671 + RR42_RS24280 0.19 +1.3 774,803 + RR42_RS24280 0.31 +0.2 774,803 + RR42_RS24280 0.31 +0.1 774,803 + RR42_RS24280 0.31 -1.1 774,803 + RR42_RS24280 0.31 -0.2 774,863 + RR42_RS24280 0.37 -0.8 775,257 + RR42_RS24280 0.74 +0.7 775,257 + RR42_RS24280 0.74 -0.2 775,458 - +0.3
Or see this region's nucleotide sequence