Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23135 and RR42_RS23140 are separated by 78 nucleotides RR42_RS23140 and RR42_RS23145 are separated by 143 nucleotides
RR42_RS23135: RR42_RS23135 - trans-2-enoyl-CoA reductase, at 522,969 to 524,165
_RS23135
RR42_RS23140: RR42_RS23140 - peptidylprolyl isomerase, at 524,244 to 524,585
_RS23140
RR42_RS23145: RR42_RS23145 - acyl-CoA transferase, at 524,729 to 525,826
_RS23145
Position (kb) 524
525 Strain fitness (log2 ratio) -1
0
1
2 at 523.307 kb on - strand, within RR42_RS23135 at 523.307 kb on - strand, within RR42_RS23135 at 523.462 kb on + strand, within RR42_RS23135 at 523.462 kb on + strand, within RR42_RS23135 at 523.462 kb on + strand, within RR42_RS23135 at 523.463 kb on - strand, within RR42_RS23135 at 523.463 kb on - strand, within RR42_RS23135 at 523.463 kb on - strand, within RR42_RS23135 at 523.492 kb on + strand, within RR42_RS23135 at 523.497 kb on - strand, within RR42_RS23135 at 523.724 kb on + strand, within RR42_RS23135 at 523.724 kb on + strand, within RR42_RS23135 at 523.724 kb on + strand, within RR42_RS23135 at 523.855 kb on + strand at 523.900 kb on + strand, within RR42_RS23135 at 523.901 kb on - strand, within RR42_RS23135 at 524.077 kb on + strand at 524.135 kb on + strand at 524.135 kb on + strand at 524.135 kb on + strand at 524.135 kb on + strand at 524.136 kb on - strand at 524.136 kb on - strand at 524.136 kb on - strand at 524.136 kb on - strand at 524.136 kb on - strand at 524.195 kb on + strand at 524.196 kb on - strand at 524.198 kb on + strand at 524.504 kb on - strand, within RR42_RS23140 at 524.504 kb on - strand, within RR42_RS23140 at 524.571 kb on + strand at 524.571 kb on + strand at 524.630 kb on + strand at 524.630 kb on + strand at 524.631 kb on - strand at 524.730 kb on + strand at 524.730 kb on + strand at 524.731 kb on - strand at 524.731 kb on - strand at 525.139 kb on + strand, within RR42_RS23145 at 525.139 kb on + strand at 525.139 kb on + strand, within RR42_RS23145 at 525.140 kb on - strand, within RR42_RS23145 at 525.140 kb on - strand, within RR42_RS23145 at 525.187 kb on - strand, within RR42_RS23145 at 525.394 kb on - strand, within RR42_RS23145 at 525.412 kb on - strand, within RR42_RS23145 at 525.412 kb on - strand, within RR42_RS23145 at 525.412 kb on - strand, within RR42_RS23145 at 525.441 kb on + strand, within RR42_RS23145 at 525.442 kb on - strand, within RR42_RS23145
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 523,307 - RR42_RS23135 0.28 -0.4 523,307 - RR42_RS23135 0.28 -0.1 523,462 + RR42_RS23135 0.41 +1.2 523,462 + RR42_RS23135 0.41 +0.6 523,462 + RR42_RS23135 0.41 -0.1 523,463 - RR42_RS23135 0.41 -0.9 523,463 - RR42_RS23135 0.41 +0.7 523,463 - RR42_RS23135 0.41 +0.5 523,492 + RR42_RS23135 0.44 +0.9 523,497 - RR42_RS23135 0.44 +0.2 523,724 + RR42_RS23135 0.63 +0.4 523,724 + RR42_RS23135 0.63 -1.1 523,724 + RR42_RS23135 0.63 +0.4 523,855 + +0.1 523,900 + RR42_RS23135 0.78 +0.8 523,901 - RR42_RS23135 0.78 -0.3 524,077 + -1.4 524,135 + -0.0 524,135 + +0.7 524,135 + -0.1 524,135 + +0.2 524,136 - +0.9 524,136 - -0.0 524,136 - +0.5 524,136 - -0.6 524,136 - -0.2 524,195 + +0.7 524,196 - -0.8 524,198 + -0.9 524,504 - RR42_RS23140 0.76 -1.0 524,504 - RR42_RS23140 0.76 +0.6 524,571 + -0.6 524,571 + +0.6 524,630 + -0.8 524,630 + +1.8 524,631 - -0.2 524,730 + +0.6 524,730 + +0.1 524,731 - -0.9 524,731 - +0.1 525,139 + RR42_RS23145 0.37 -0.9 525,139 + -0.5 525,139 + RR42_RS23145 0.37 -0.4 525,140 - RR42_RS23145 0.37 +0.7 525,140 - RR42_RS23145 0.37 +0.2 525,187 - RR42_RS23145 0.42 +1.1 525,394 - RR42_RS23145 0.61 -0.3 525,412 - RR42_RS23145 0.62 -0.4 525,412 - RR42_RS23145 0.62 -1.4 525,412 - RR42_RS23145 0.62 +0.1 525,441 + RR42_RS23145 0.65 +0.4 525,442 - RR42_RS23145 0.65 +0.7
Or see this region's nucleotide sequence