Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22305 and RR42_RS22310 are separated by 12 nucleotides RR42_RS22310 and RR42_RS22315 are separated by 202 nucleotides RR42_RS22315 and RR42_RS22320 are separated by 35 nucleotides
RR42_RS22305: RR42_RS22305 - histidine kinase, at 344,783 to 346,276
_RS22305
RR42_RS22310: RR42_RS22310 - LysR family transcriptional regulator, at 346,289 to 347,188
_RS22310
RR42_RS22315: RR42_RS22315 - LysR family transcriptional regulator, at 347,391 to 347,831
_RS22315
RR42_RS22320: RR42_RS22320 - MFS transporter, at 347,867 to 349,171
_RS22320
Position (kb) 346
347
348 Strain fitness (log2 ratio) -2
-1
0
1
2 at 345.607 kb on + strand, within RR42_RS22305 at 345.651 kb on - strand, within RR42_RS22305 at 345.708 kb on - strand, within RR42_RS22305 at 345.708 kb on - strand, within RR42_RS22305 at 346.220 kb on - strand at 346.220 kb on - strand at 346.363 kb on - strand at 346.381 kb on - strand, within RR42_RS22310 at 346.463 kb on - strand, within RR42_RS22310 at 346.528 kb on + strand, within RR42_RS22310 at 346.528 kb on + strand, within RR42_RS22310 at 346.529 kb on - strand, within RR42_RS22310 at 346.529 kb on - strand, within RR42_RS22310 at 346.529 kb on - strand, within RR42_RS22310 at 347.069 kb on - strand, within RR42_RS22310 at 347.069 kb on - strand, within RR42_RS22310 at 347.070 kb on + strand, within RR42_RS22310 at 347.070 kb on + strand, within RR42_RS22310 at 347.071 kb on - strand, within RR42_RS22310 at 347.071 kb on - strand, within RR42_RS22310 at 347.200 kb on + strand at 347.219 kb on + strand at 347.219 kb on + strand at 347.254 kb on - strand at 347.259 kb on + strand at 347.545 kb on - strand, within RR42_RS22315 at 347.653 kb on + strand, within RR42_RS22315 at 347.654 kb on - strand, within RR42_RS22315 at 347.654 kb on - strand, within RR42_RS22315 at 347.654 kb on - strand, within RR42_RS22315 at 347.654 kb on - strand, within RR42_RS22315 at 347.675 kb on + strand, within RR42_RS22315 at 347.784 kb on + strand, within RR42_RS22315 at 347.785 kb on - strand, within RR42_RS22315 at 347.922 kb on + strand at 347.922 kb on + strand at 347.923 kb on - strand at 347.923 kb on - strand at 347.923 kb on - strand at 347.923 kb on - strand at 347.923 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 345,607 + RR42_RS22305 0.55 +0.4 345,651 - RR42_RS22305 0.58 -0.9 345,708 - RR42_RS22305 0.62 +0.8 345,708 - RR42_RS22305 0.62 -1.9 346,220 - +0.1 346,220 - +0.6 346,363 - +0.6 346,381 - RR42_RS22310 0.10 -0.4 346,463 - RR42_RS22310 0.19 +1.1 346,528 + RR42_RS22310 0.27 -0.8 346,528 + RR42_RS22310 0.27 +1.0 346,529 - RR42_RS22310 0.27 +0.2 346,529 - RR42_RS22310 0.27 -0.1 346,529 - RR42_RS22310 0.27 +0.1 347,069 - RR42_RS22310 0.87 -0.1 347,069 - RR42_RS22310 0.87 -1.6 347,070 + RR42_RS22310 0.87 +1.0 347,070 + RR42_RS22310 0.87 +0.3 347,071 - RR42_RS22310 0.87 +1.6 347,071 - RR42_RS22310 0.87 -0.2 347,200 + -0.8 347,219 + -0.1 347,219 + +0.4 347,254 - -0.4 347,259 + +0.1 347,545 - RR42_RS22315 0.35 +0.4 347,653 + RR42_RS22315 0.59 -0.6 347,654 - RR42_RS22315 0.60 -0.6 347,654 - RR42_RS22315 0.60 +0.4 347,654 - RR42_RS22315 0.60 +0.2 347,654 - RR42_RS22315 0.60 -0.5 347,675 + RR42_RS22315 0.64 -0.5 347,784 + RR42_RS22315 0.89 +0.4 347,785 - RR42_RS22315 0.89 +0.5 347,922 + -0.6 347,922 + -0.7 347,923 - +1.8 347,923 - +0.7 347,923 - -0.6 347,923 - -0.1 347,923 - -0.8
Or see this region's nucleotide sequence