Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS18990 and RR42_RS18995 are separated by 378 nucleotides RR42_RS18995 and RR42_RS19000 are separated by 122 nucleotides
RR42_RS18990: RR42_RS18990 - glutamate synthase, at 4,109,748 to 4,114,529
_RS18990
RR42_RS18995: RR42_RS18995 - transposase, at 4,114,908 to 4,115,630
_RS18995
RR42_RS19000: RR42_RS19000 - deoxyguanosinetriphosphate triphosphohydrolase, at 4,115,753 to 4,116,889
_RS19000
Position (kb) 4114
4115
4116 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 4113.913 kb on + strand, within RR42_RS18990 at 4113.913 kb on + strand, within RR42_RS18990 at 4113.913 kb on + strand, within RR42_RS18990 at 4113.914 kb on - strand, within RR42_RS18990 at 4113.976 kb on + strand, within RR42_RS18990 at 4113.976 kb on + strand, within RR42_RS18990 at 4113.977 kb on - strand, within RR42_RS18990 at 4113.977 kb on - strand, within RR42_RS18990 at 4113.977 kb on - strand, within RR42_RS18990 at 4113.983 kb on + strand, within RR42_RS18990 at 4113.983 kb on + strand, within RR42_RS18990 at 4113.983 kb on + strand, within RR42_RS18990 at 4114.213 kb on + strand at 4114.213 kb on + strand at 4114.214 kb on - strand at 4114.214 kb on - strand at 4114.264 kb on + strand at 4114.265 kb on - strand at 4114.403 kb on + strand at 4114.403 kb on + strand at 4114.403 kb on + strand at 4114.403 kb on + strand at 4114.403 kb on + strand at 4114.404 kb on - strand at 4114.404 kb on - strand at 4114.453 kb on + strand at 4114.453 kb on + strand at 4114.453 kb on + strand at 4114.453 kb on + strand at 4114.453 kb on + strand at 4114.454 kb on - strand at 4114.454 kb on - strand at 4114.454 kb on - strand at 4114.454 kb on - strand at 4114.732 kb on - strand at 4114.732 kb on - strand at 4114.733 kb on + strand at 4114.734 kb on - strand at 4114.734 kb on - strand at 4114.734 kb on - strand at 4114.829 kb on + strand at 4114.867 kb on + strand at 4114.867 kb on + strand at 4114.868 kb on - strand at 4114.868 kb on - strand at 4114.886 kb on - strand at 4114.909 kb on + strand at 4114.909 kb on + strand at 4114.910 kb on - strand at 4115.110 kb on + strand, within RR42_RS18995 at 4115.110 kb on + strand, within RR42_RS18995 at 4115.135 kb on + strand, within RR42_RS18995 at 4115.136 kb on - strand, within RR42_RS18995 at 4115.272 kb on + strand, within RR42_RS18995 at 4115.272 kb on + strand, within RR42_RS18995 at 4115.272 kb on + strand, within RR42_RS18995 at 4115.272 kb on + strand, within RR42_RS18995 at 4115.272 kb on + strand, within RR42_RS18995 at 4115.273 kb on - strand, within RR42_RS18995 at 4115.273 kb on - strand, within RR42_RS18995 at 4115.273 kb on - strand, within RR42_RS18995 at 4115.372 kb on - strand, within RR42_RS18995 at 4115.470 kb on + strand, within RR42_RS18995 at 4115.470 kb on + strand, within RR42_RS18995 at 4115.470 kb on + strand, within RR42_RS18995 at 4115.470 kb on + strand, within RR42_RS18995 at 4115.471 kb on - strand, within RR42_RS18995 at 4115.471 kb on - strand, within RR42_RS18995 at 4115.525 kb on - strand, within RR42_RS18995 at 4115.525 kb on - strand, within RR42_RS18995 at 4115.525 kb on - strand, within RR42_RS18995 at 4115.534 kb on - strand, within RR42_RS18995 at 4115.534 kb on - strand, within RR42_RS18995 at 4115.534 kb on - strand, within RR42_RS18995 at 4115.653 kb on + strand at 4115.653 kb on + strand at 4115.653 kb on + strand at 4115.653 kb on + strand at 4115.654 kb on - strand at 4115.654 kb on - strand at 4115.654 kb on - strand at 4115.701 kb on + strand at 4115.702 kb on - strand at 4115.702 kb on - strand at 4115.755 kb on - strand at 4115.826 kb on + strand at 4115.826 kb on + strand at 4115.826 kb on + strand at 4115.827 kb on - strand at 4115.827 kb on - strand at 4115.827 kb on - strand at 4115.950 kb on + strand, within RR42_RS19000 at 4115.950 kb on + strand, within RR42_RS19000 at 4115.950 kb on + strand, within RR42_RS19000 at 4115.950 kb on + strand, within RR42_RS19000 at 4115.950 kb on + strand, within RR42_RS19000 at 4115.950 kb on + strand, within RR42_RS19000 at 4115.950 kb on + strand, within RR42_RS19000 at 4115.950 kb on + strand, within RR42_RS19000 at 4115.950 kb on + strand, within RR42_RS19000 at 4115.950 kb on + strand, within RR42_RS19000 at 4115.950 kb on + strand, within RR42_RS19000 at 4115.951 kb on - strand, within RR42_RS19000 at 4115.951 kb on - strand, within RR42_RS19000 at 4115.951 kb on - strand, within RR42_RS19000 at 4115.951 kb on - strand, within RR42_RS19000 at 4115.951 kb on - strand, within RR42_RS19000 at 4115.951 kb on - strand, within RR42_RS19000 at 4115.951 kb on - strand, within RR42_RS19000 at 4115.951 kb on - strand, within RR42_RS19000 at 4115.951 kb on - strand, within RR42_RS19000 at 4115.951 kb on - strand, within RR42_RS19000 at 4115.951 kb on - strand, within RR42_RS19000 at 4115.951 kb on - strand, within RR42_RS19000 at 4115.951 kb on - strand, within RR42_RS19000 at 4115.964 kb on + strand, within RR42_RS19000 at 4115.965 kb on - strand, within RR42_RS19000 at 4115.974 kb on - strand, within RR42_RS19000 at 4116.070 kb on + strand, within RR42_RS19000 at 4116.149 kb on + strand, within RR42_RS19000 at 4116.297 kb on + strand, within RR42_RS19000 at 4116.298 kb on - strand, within RR42_RS19000 at 4116.298 kb on - strand, within RR42_RS19000 at 4116.492 kb on - strand, within RR42_RS19000 at 4116.492 kb on - strand, within RR42_RS19000
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 4,113,913 + RR42_RS18990 0.87 -1.5 4,113,913 + RR42_RS18990 0.87 -0.1 4,113,913 + RR42_RS18990 0.87 -0.6 4,113,914 - RR42_RS18990 0.87 -1.4 4,113,976 + RR42_RS18990 0.88 -2.9 4,113,976 + RR42_RS18990 0.88 -2.9 4,113,977 - RR42_RS18990 0.88 -2.5 4,113,977 - RR42_RS18990 0.88 -3.9 4,113,977 - RR42_RS18990 0.88 -4.2 4,113,983 + RR42_RS18990 0.89 -4.6 4,113,983 + RR42_RS18990 0.89 -4.8 4,113,983 + RR42_RS18990 0.89 -3.5 4,114,213 + -2.8 4,114,213 + -6.6 4,114,214 - -3.3 4,114,214 - -3.7 4,114,264 + -2.2 4,114,265 - -1.3 4,114,403 + -4.1 4,114,403 + -2.9 4,114,403 + -4.5 4,114,403 + +0.4 4,114,403 + -3.9 4,114,404 - -3.6 4,114,404 - -4.1 4,114,453 + -0.6 4,114,453 + -1.1 4,114,453 + -0.9 4,114,453 + -4.3 4,114,453 + -2.9 4,114,454 - -1.4 4,114,454 - -2.3 4,114,454 - -0.9 4,114,454 - -3.1 4,114,732 - -5.2 4,114,732 - -1.7 4,114,733 + -1.4 4,114,734 - -2.6 4,114,734 - -2.1 4,114,734 - -2.6 4,114,829 + +1.4 4,114,867 + -0.2 4,114,867 + +0.3 4,114,868 - -0.9 4,114,868 - +1.4 4,114,886 - -0.3 4,114,909 + -0.7 4,114,909 + -0.1 4,114,910 - +2.0 4,115,110 + RR42_RS18995 0.28 -3.0 4,115,110 + RR42_RS18995 0.28 +0.4 4,115,135 + RR42_RS18995 0.31 -2.6 4,115,136 - RR42_RS18995 0.32 -2.8 4,115,272 + RR42_RS18995 0.50 -2.3 4,115,272 + RR42_RS18995 0.50 -2.6 4,115,272 + RR42_RS18995 0.50 -1.7 4,115,272 + RR42_RS18995 0.50 -2.7 4,115,272 + RR42_RS18995 0.50 -2.1 4,115,273 - RR42_RS18995 0.50 -2.1 4,115,273 - RR42_RS18995 0.50 -2.0 4,115,273 - RR42_RS18995 0.50 -2.5 4,115,372 - RR42_RS18995 0.64 +0.1 4,115,470 + RR42_RS18995 0.78 -2.1 4,115,470 + RR42_RS18995 0.78 -0.6 4,115,470 + RR42_RS18995 0.78 -0.4 4,115,470 + RR42_RS18995 0.78 -2.9 4,115,471 - RR42_RS18995 0.78 +0.2 4,115,471 - RR42_RS18995 0.78 +0.2 4,115,525 - RR42_RS18995 0.85 -0.3 4,115,525 - RR42_RS18995 0.85 -2.7 4,115,525 - RR42_RS18995 0.85 -0.9 4,115,534 - RR42_RS18995 0.87 +0.8 4,115,534 - RR42_RS18995 0.87 -2.5 4,115,534 - RR42_RS18995 0.87 -0.6 4,115,653 + -0.9 4,115,653 + -0.4 4,115,653 + +0.0 4,115,653 + -1.2 4,115,654 - -0.2 4,115,654 - +2.1 4,115,654 - -0.7 4,115,701 + +0.3 4,115,702 - +0.8 4,115,702 - -0.6 4,115,755 - +0.1 4,115,826 + +0.0 4,115,826 + -0.6 4,115,826 + +0.0 4,115,827 - -0.3 4,115,827 - +0.5 4,115,827 - -0.6 4,115,950 + RR42_RS19000 0.17 -1.1 4,115,950 + RR42_RS19000 0.17 +0.4 4,115,950 + RR42_RS19000 0.17 -0.0 4,115,950 + RR42_RS19000 0.17 -0.4 4,115,950 + RR42_RS19000 0.17 +0.4 4,115,950 + RR42_RS19000 0.17 +1.4 4,115,950 + RR42_RS19000 0.17 +0.1 4,115,950 + RR42_RS19000 0.17 +0.4 4,115,950 + RR42_RS19000 0.17 -0.3 4,115,950 + RR42_RS19000 0.17 +0.8 4,115,950 + RR42_RS19000 0.17 +0.0 4,115,951 - RR42_RS19000 0.17 +0.5 4,115,951 - RR42_RS19000 0.17 -0.2 4,115,951 - RR42_RS19000 0.17 +0.1 4,115,951 - RR42_RS19000 0.17 -0.7 4,115,951 - RR42_RS19000 0.17 +0.3 4,115,951 - RR42_RS19000 0.17 -0.7 4,115,951 - RR42_RS19000 0.17 -0.4 4,115,951 - RR42_RS19000 0.17 -0.3 4,115,951 - RR42_RS19000 0.17 +0.5 4,115,951 - RR42_RS19000 0.17 +0.4 4,115,951 - RR42_RS19000 0.17 -0.4 4,115,951 - RR42_RS19000 0.17 +0.7 4,115,951 - RR42_RS19000 0.17 -0.3 4,115,964 + RR42_RS19000 0.19 +0.1 4,115,965 - RR42_RS19000 0.19 -0.3 4,115,974 - RR42_RS19000 0.19 -0.8 4,116,070 + RR42_RS19000 0.28 +0.5 4,116,149 + RR42_RS19000 0.35 +1.7 4,116,297 + RR42_RS19000 0.48 +0.4 4,116,298 - RR42_RS19000 0.48 -0.5 4,116,298 - RR42_RS19000 0.48 -0.8 4,116,492 - RR42_RS19000 0.65 -1.1 4,116,492 - RR42_RS19000 0.65 -0.1
Or see this region's nucleotide sequence