Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS17660

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS17655 and RR42_RS17660 are separated by 183 nucleotidesRR42_RS17660 and RR42_RS17665 are separated by 28 nucleotidesRR42_RS17665 and RR42_RS17670 are separated by 85 nucleotides RR42_RS17655: RR42_RS17655 - ribonuclease II, at 3,819,844 to 3,822,000 _RS17655 RR42_RS17660: RR42_RS17660 - 3-oxoacyl-ACP synthase, at 3,822,184 to 3,822,924 _RS17660 RR42_RS17665: RR42_RS17665 - chorismate lyase, at 3,822,953 to 3,823,594 _RS17665 RR42_RS17670: RR42_RS17670 - esterase, at 3,823,680 to 3,824,267 _RS17670 Position (kb) 3822 3823Strain fitness (log2 ratio) -2 -1 0 1 2at 3822.185 kb on + strandat 3822.185 kb on + strandat 3822.185 kb on + strandat 3822.230 kb on + strandat 3822.230 kb on + strandat 3822.231 kb on - strandat 3822.231 kb on - strandat 3822.260 kb on + strand, within RR42_RS17660at 3822.260 kb on + strand, within RR42_RS17660at 3822.260 kb on + strand, within RR42_RS17660at 3822.260 kb on + strand, within RR42_RS17660at 3822.260 kb on + strand, within RR42_RS17660at 3822.261 kb on - strand, within RR42_RS17660at 3822.261 kb on - strand, within RR42_RS17660at 3822.261 kb on - strand, within RR42_RS17660at 3822.261 kb on - strand, within RR42_RS17660at 3822.312 kb on - strand, within RR42_RS17660at 3822.464 kb on + strand, within RR42_RS17660at 3822.464 kb on + strand, within RR42_RS17660at 3822.465 kb on - strand, within RR42_RS17660at 3822.465 kb on - strand, within RR42_RS17660at 3822.465 kb on - strand, within RR42_RS17660at 3822.465 kb on - strand, within RR42_RS17660at 3822.488 kb on + strand, within RR42_RS17660at 3822.749 kb on + strand, within RR42_RS17660at 3822.749 kb on + strand, within RR42_RS17660at 3822.749 kb on + strand, within RR42_RS17660at 3822.749 kb on + strand, within RR42_RS17660at 3822.749 kb on + strand, within RR42_RS17660at 3822.988 kb on + strandat 3822.988 kb on + strandat 3822.989 kb on - strandat 3822.989 kb on - strandat 3823.056 kb on - strand, within RR42_RS17665at 3823.154 kb on + strand, within RR42_RS17665at 3823.318 kb on + strand, within RR42_RS17665at 3823.550 kb on + strandat 3823.550 kb on + strandat 3823.550 kb on + strandat 3823.726 kb on + strandat 3823.726 kb on + strandat 3823.727 kb on - strandat 3823.727 kb on - strandat 3823.849 kb on + strand, within RR42_RS17670at 3823.849 kb on + strand, within RR42_RS17670at 3823.850 kb on - strand, within RR42_RS17670

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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3,822,185 + +0.8
3,822,185 + +0.2
3,822,185 + -1.3
3,822,230 + +0.1
3,822,230 + +1.6
3,822,231 - +1.4
3,822,231 - -1.0
3,822,260 + RR42_RS17660 0.10 +0.3
3,822,260 + RR42_RS17660 0.10 +0.1
3,822,260 + RR42_RS17660 0.10 +2.0
3,822,260 + RR42_RS17660 0.10 +0.1
3,822,260 + RR42_RS17660 0.10 -0.7
3,822,261 - RR42_RS17660 0.10 +0.2
3,822,261 - RR42_RS17660 0.10 +0.2
3,822,261 - RR42_RS17660 0.10 -2.6
3,822,261 - RR42_RS17660 0.10 +0.0
3,822,312 - RR42_RS17660 0.17 +0.6
3,822,464 + RR42_RS17660 0.38 -1.3
3,822,464 + RR42_RS17660 0.38 -0.2
3,822,465 - RR42_RS17660 0.38 -1.2
3,822,465 - RR42_RS17660 0.38 +0.7
3,822,465 - RR42_RS17660 0.38 -0.2
3,822,465 - RR42_RS17660 0.38 +0.1
3,822,488 + RR42_RS17660 0.41 +0.8
3,822,749 + RR42_RS17660 0.76 +0.1
3,822,749 + RR42_RS17660 0.76 +0.9
3,822,749 + RR42_RS17660 0.76 +0.3
3,822,749 + RR42_RS17660 0.76 +1.8
3,822,749 + RR42_RS17660 0.76 -0.0
3,822,988 + +0.7
3,822,988 + +0.8
3,822,989 - -0.0
3,822,989 - +0.1
3,823,056 - RR42_RS17665 0.16 +0.3
3,823,154 + RR42_RS17665 0.31 +0.4
3,823,318 + RR42_RS17665 0.57 +1.3
3,823,550 + +0.3
3,823,550 + -0.3
3,823,550 + +0.1
3,823,726 + -1.0
3,823,726 + +1.6
3,823,727 - +0.2
3,823,727 - +0.4
3,823,849 + RR42_RS17670 0.29 -0.0
3,823,849 + RR42_RS17670 0.29 +0.4
3,823,850 - RR42_RS17670 0.29 +0.0

Or see this region's nucleotide sequence