Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS17655 and RR42_RS17660 are separated by 183 nucleotides RR42_RS17660 and RR42_RS17665 are separated by 28 nucleotides RR42_RS17665 and RR42_RS17670 are separated by 85 nucleotides
RR42_RS17655: RR42_RS17655 - ribonuclease II, at 3,819,844 to 3,822,000
_RS17655
RR42_RS17660: RR42_RS17660 - 3-oxoacyl-ACP synthase, at 3,822,184 to 3,822,924
_RS17660
RR42_RS17665: RR42_RS17665 - chorismate lyase, at 3,822,953 to 3,823,594
_RS17665
RR42_RS17670: RR42_RS17670 - esterase, at 3,823,680 to 3,824,267
_RS17670
Position (kb)
3822
3823 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3822.185 kb on + strand at 3822.185 kb on + strand at 3822.185 kb on + strand at 3822.230 kb on + strand at 3822.230 kb on + strand at 3822.231 kb on - strand at 3822.231 kb on - strand at 3822.260 kb on + strand, within RR42_RS17660 at 3822.260 kb on + strand, within RR42_RS17660 at 3822.260 kb on + strand, within RR42_RS17660 at 3822.260 kb on + strand, within RR42_RS17660 at 3822.260 kb on + strand, within RR42_RS17660 at 3822.261 kb on - strand, within RR42_RS17660 at 3822.261 kb on - strand, within RR42_RS17660 at 3822.261 kb on - strand, within RR42_RS17660 at 3822.261 kb on - strand, within RR42_RS17660 at 3822.312 kb on - strand, within RR42_RS17660 at 3822.464 kb on + strand, within RR42_RS17660 at 3822.464 kb on + strand, within RR42_RS17660 at 3822.465 kb on - strand, within RR42_RS17660 at 3822.465 kb on - strand, within RR42_RS17660 at 3822.465 kb on - strand, within RR42_RS17660 at 3822.465 kb on - strand, within RR42_RS17660 at 3822.488 kb on + strand, within RR42_RS17660 at 3822.749 kb on + strand, within RR42_RS17660 at 3822.749 kb on + strand, within RR42_RS17660 at 3822.749 kb on + strand, within RR42_RS17660 at 3822.749 kb on + strand, within RR42_RS17660 at 3822.749 kb on + strand, within RR42_RS17660 at 3822.988 kb on + strand at 3822.988 kb on + strand at 3822.989 kb on - strand at 3822.989 kb on - strand at 3823.056 kb on - strand, within RR42_RS17665 at 3823.154 kb on + strand, within RR42_RS17665 at 3823.318 kb on + strand, within RR42_RS17665 at 3823.550 kb on + strand at 3823.550 kb on + strand at 3823.550 kb on + strand at 3823.726 kb on + strand at 3823.726 kb on + strand at 3823.727 kb on - strand at 3823.727 kb on - strand at 3823.849 kb on + strand, within RR42_RS17670 at 3823.849 kb on + strand, within RR42_RS17670 at 3823.850 kb on - strand, within RR42_RS17670
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 3,822,185 + +0.8 3,822,185 + +0.2 3,822,185 + -1.3 3,822,230 + +0.1 3,822,230 + +1.6 3,822,231 - +1.4 3,822,231 - -1.0 3,822,260 + RR42_RS17660 0.10 +0.3 3,822,260 + RR42_RS17660 0.10 +0.1 3,822,260 + RR42_RS17660 0.10 +2.0 3,822,260 + RR42_RS17660 0.10 +0.1 3,822,260 + RR42_RS17660 0.10 -0.7 3,822,261 - RR42_RS17660 0.10 +0.2 3,822,261 - RR42_RS17660 0.10 +0.2 3,822,261 - RR42_RS17660 0.10 -2.6 3,822,261 - RR42_RS17660 0.10 +0.0 3,822,312 - RR42_RS17660 0.17 +0.6 3,822,464 + RR42_RS17660 0.38 -1.3 3,822,464 + RR42_RS17660 0.38 -0.2 3,822,465 - RR42_RS17660 0.38 -1.2 3,822,465 - RR42_RS17660 0.38 +0.7 3,822,465 - RR42_RS17660 0.38 -0.2 3,822,465 - RR42_RS17660 0.38 +0.1 3,822,488 + RR42_RS17660 0.41 +0.8 3,822,749 + RR42_RS17660 0.76 +0.1 3,822,749 + RR42_RS17660 0.76 +0.9 3,822,749 + RR42_RS17660 0.76 +0.3 3,822,749 + RR42_RS17660 0.76 +1.8 3,822,749 + RR42_RS17660 0.76 -0.0 3,822,988 + +0.7 3,822,988 + +0.8 3,822,989 - -0.0 3,822,989 - +0.1 3,823,056 - RR42_RS17665 0.16 +0.3 3,823,154 + RR42_RS17665 0.31 +0.4 3,823,318 + RR42_RS17665 0.57 +1.3 3,823,550 + +0.3 3,823,550 + -0.3 3,823,550 + +0.1 3,823,726 + -1.0 3,823,726 + +1.6 3,823,727 - +0.2 3,823,727 - +0.4 3,823,849 + RR42_RS17670 0.29 -0.0 3,823,849 + RR42_RS17670 0.29 +0.4 3,823,850 - RR42_RS17670 0.29 +0.0
Or see this region's nucleotide sequence