Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS11570

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS11565 and RR42_RS11570 are separated by 601 nucleotidesRR42_RS11570 and RR42_RS11575 are separated by 332 nucleotidesRR42_RS11575 and RR42_RS11580 are separated by 92 nucleotides RR42_RS11565: RR42_RS11565 - diguanylate cyclase, at 2,475,237 to 2,477,711 _RS11565 RR42_RS11570: RR42_RS11570 - magnesium transporter MgtC, at 2,478,313 to 2,478,633 _RS11570 RR42_RS11575: RR42_RS11575 - hypothetical protein, at 2,478,966 to 2,479,154 _RS11575 RR42_RS11580: RR42_RS11580 - hypothetical protein, at 2,479,247 to 2,480,086 _RS11580 Position (kb) 2478 2479Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2477.372 kb on + strand, within RR42_RS11565at 2477.450 kb on + strand, within RR42_RS11565at 2477.450 kb on + strand, within RR42_RS11565at 2477.451 kb on - strand, within RR42_RS11565at 2477.451 kb on - strand, within RR42_RS11565at 2477.532 kb on + strandat 2477.533 kb on - strandat 2477.695 kb on + strandat 2477.695 kb on + strandat 2477.695 kb on + strandat 2477.695 kb on + strandat 2477.696 kb on - strandat 2477.696 kb on - strandat 2477.707 kb on + strandat 2477.752 kb on - strandat 2478.000 kb on - strandat 2478.000 kb on - strandat 2478.012 kb on + strandat 2478.013 kb on - strandat 2478.250 kb on + strandat 2478.625 kb on + strandat 2478.694 kb on + strandat 2478.883 kb on + strandat 2478.883 kb on + strandat 2478.883 kb on + strandat 2478.884 kb on - strandat 2478.884 kb on - strandat 2478.884 kb on - strandat 2478.884 kb on - strandat 2478.886 kb on - strandat 2478.912 kb on + strandat 2479.177 kb on + strandat 2479.338 kb on + strand, within RR42_RS11580

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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2,477,372 + RR42_RS11565 0.86 +0.1
2,477,450 + RR42_RS11565 0.89 +0.6
2,477,450 + RR42_RS11565 0.89 +0.6
2,477,451 - RR42_RS11565 0.89 -0.4
2,477,451 - RR42_RS11565 0.89 +0.1
2,477,532 + -0.2
2,477,533 - +0.3
2,477,695 + -0.7
2,477,695 + +0.6
2,477,695 + +0.4
2,477,695 + -0.4
2,477,696 - +1.0
2,477,696 - -0.2
2,477,707 + +0.2
2,477,752 - -0.9
2,478,000 - +0.0
2,478,000 - -0.9
2,478,012 + +0.4
2,478,013 - +0.5
2,478,250 + +0.1
2,478,625 + -1.2
2,478,694 + +0.1
2,478,883 + -0.8
2,478,883 + +0.2
2,478,883 + -0.1
2,478,884 - -0.2
2,478,884 - +2.8
2,478,884 - -0.2
2,478,884 - +0.1
2,478,886 - +0.3
2,478,912 + -2.1
2,479,177 + +1.4
2,479,338 + RR42_RS11580 0.11 -0.9

Or see this region's nucleotide sequence