Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS07580 and RR42_RS07585 are separated by 105 nucleotides RR42_RS07585 and RR42_RS07590 are separated by 16 nucleotides RR42_RS07590 and RR42_RS07595 overlap by 11 nucleotides RR42_RS07595 and RR42_RS07600 are separated by 13 nucleotides
RR42_RS07580: RR42_RS07580 - helicase, at 1,622,488 to 1,624,692
_RS07580
RR42_RS07585: RR42_RS07585 - competence protein ComL, at 1,624,798 to 1,625,628
_RS07585
RR42_RS07590: RR42_RS07590 - pseudouridine synthase, at 1,625,645 to 1,626,862
_RS07590
RR42_RS07595: RR42_RS07595 - hypothetical protein, at 1,626,852 to 1,627,655
_RS07595
RR42_RS07600: RR42_RS07600 - membrane protein, at 1,627,669 to 1,627,929
_RS07600
Position (kb) 1625
1626
1627 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1624.841 kb on + strand at 1624.850 kb on + strand at 1624.850 kb on + strand at 1624.851 kb on - strand at 1624.851 kb on - strand at 1625.667 kb on - strand at 1625.785 kb on - strand, within RR42_RS07590 at 1626.083 kb on + strand, within RR42_RS07590 at 1626.083 kb on + strand, within RR42_RS07590 at 1626.083 kb on + strand, within RR42_RS07590 at 1626.084 kb on - strand, within RR42_RS07590 at 1626.169 kb on - strand, within RR42_RS07590 at 1626.332 kb on + strand, within RR42_RS07590 at 1626.333 kb on - strand, within RR42_RS07590 at 1626.466 kb on + strand, within RR42_RS07590 at 1626.596 kb on + strand, within RR42_RS07590 at 1626.597 kb on - strand, within RR42_RS07590 at 1626.724 kb on - strand, within RR42_RS07590 at 1626.724 kb on - strand, within RR42_RS07590 at 1626.724 kb on - strand, within RR42_RS07590 at 1626.845 kb on + strand at 1626.875 kb on - strand at 1626.875 kb on - strand at 1626.875 kb on - strand at 1626.952 kb on - strand, within RR42_RS07595 at 1627.488 kb on + strand, within RR42_RS07595 at 1627.488 kb on + strand, within RR42_RS07595 at 1627.488 kb on + strand, within RR42_RS07595 at 1627.489 kb on - strand, within RR42_RS07595 at 1627.499 kb on + strand, within RR42_RS07595 at 1627.500 kb on - strand, within RR42_RS07595 at 1627.500 kb on - strand, within RR42_RS07595 at 1627.503 kb on + strand, within RR42_RS07595 at 1627.503 kb on + strand, within RR42_RS07595 at 1627.503 kb on + strand, within RR42_RS07595 at 1627.503 kb on + strand, within RR42_RS07595 at 1627.503 kb on + strand, within RR42_RS07595 at 1627.504 kb on - strand, within RR42_RS07595 at 1627.504 kb on - strand, within RR42_RS07595 at 1627.504 kb on - strand, within RR42_RS07595 at 1627.504 kb on - strand, within RR42_RS07595 at 1627.504 kb on - strand, within RR42_RS07595 at 1627.593 kb on + strand at 1627.593 kb on + strand at 1627.594 kb on - strand at 1627.600 kb on - strand at 1627.805 kb on + strand, within RR42_RS07600 at 1627.805 kb on + strand, within RR42_RS07600 at 1627.806 kb on - strand, within RR42_RS07600 at 1627.806 kb on - strand, within RR42_RS07600 at 1627.806 kb on - strand, within RR42_RS07600 at 1627.806 kb on - strand, within RR42_RS07600 at 1627.806 kb on - strand, within RR42_RS07600 at 1627.835 kb on + strand, within RR42_RS07600 at 1627.836 kb on - strand, within RR42_RS07600 at 1627.836 kb on - strand, within RR42_RS07600 at 1627.836 kb on - strand, within RR42_RS07600
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 1,624,841 + -0.4 1,624,850 + +0.1 1,624,850 + -0.7 1,624,851 - +0.0 1,624,851 - +0.0 1,625,667 - -1.1 1,625,785 - RR42_RS07590 0.11 +0.9 1,626,083 + RR42_RS07590 0.36 -2.1 1,626,083 + RR42_RS07590 0.36 -1.0 1,626,083 + RR42_RS07590 0.36 -0.6 1,626,084 - RR42_RS07590 0.36 +1.4 1,626,169 - RR42_RS07590 0.43 -1.5 1,626,332 + RR42_RS07590 0.56 -1.4 1,626,333 - RR42_RS07590 0.56 +0.3 1,626,466 + RR42_RS07590 0.67 -0.4 1,626,596 + RR42_RS07590 0.78 +0.4 1,626,597 - RR42_RS07590 0.78 +0.4 1,626,724 - RR42_RS07590 0.89 -1.5 1,626,724 - RR42_RS07590 0.89 -1.1 1,626,724 - RR42_RS07590 0.89 -0.8 1,626,845 + -0.1 1,626,875 - -3.1 1,626,875 - -0.0 1,626,875 - +0.6 1,626,952 - RR42_RS07595 0.12 +0.4 1,627,488 + RR42_RS07595 0.79 -0.9 1,627,488 + RR42_RS07595 0.79 -0.4 1,627,488 + RR42_RS07595 0.79 -0.6 1,627,489 - RR42_RS07595 0.79 +0.0 1,627,499 + RR42_RS07595 0.80 +0.3 1,627,500 - RR42_RS07595 0.81 +0.2 1,627,500 - RR42_RS07595 0.81 -0.0 1,627,503 + RR42_RS07595 0.81 -0.4 1,627,503 + RR42_RS07595 0.81 -0.1 1,627,503 + RR42_RS07595 0.81 -1.2 1,627,503 + RR42_RS07595 0.81 -0.2 1,627,503 + RR42_RS07595 0.81 -0.7 1,627,504 - RR42_RS07595 0.81 -2.8 1,627,504 - RR42_RS07595 0.81 +0.4 1,627,504 - RR42_RS07595 0.81 +0.1 1,627,504 - RR42_RS07595 0.81 +0.3 1,627,504 - RR42_RS07595 0.81 +0.4 1,627,593 + -0.6 1,627,593 + -0.1 1,627,594 - +0.2 1,627,600 - -0.9 1,627,805 + RR42_RS07600 0.52 +0.1 1,627,805 + RR42_RS07600 0.52 -1.4 1,627,806 - RR42_RS07600 0.52 -1.3 1,627,806 - RR42_RS07600 0.52 -0.1 1,627,806 - RR42_RS07600 0.52 +0.0 1,627,806 - RR42_RS07600 0.52 -1.0 1,627,806 - RR42_RS07600 0.52 +0.3 1,627,835 + RR42_RS07600 0.64 -0.1 1,627,836 - RR42_RS07600 0.64 -0.6 1,627,836 - RR42_RS07600 0.64 +0.0 1,627,836 - RR42_RS07600 0.64 +0.1
Or see this region's nucleotide sequence