Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5737

Experiment: Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5736 and Pf6N2E2_5737 are separated by 449 nucleotidesPf6N2E2_5737 and Pf6N2E2_5738 are separated by 11 nucleotides Pf6N2E2_5736 - FIG00961250: hypothetical protein, at 6,553,214 to 6,553,798 _5736 Pf6N2E2_5737 - Cob(I)alamin adenosyltransferase (EC 2.5.1.17), at 6,554,248 to 6,554,859 _5737 Pf6N2E2_5738 - Cobyrinic acid A,C-diamide synthase, at 6,554,871 to 6,556,187 _5738 Position (kb) 6554 6555Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6553.257 kb on + strandat 6553.257 kb on + strandat 6553.257 kb on + strandat 6553.258 kb on - strandat 6553.258 kb on - strandat 6553.258 kb on - strandat 6553.258 kb on - strandat 6553.302 kb on + strand, within Pf6N2E2_5736at 6553.302 kb on + strand, within Pf6N2E2_5736at 6553.302 kb on + strand, within Pf6N2E2_5736at 6553.302 kb on + strand, within Pf6N2E2_5736at 6553.303 kb on - strand, within Pf6N2E2_5736at 6553.303 kb on - strand, within Pf6N2E2_5736at 6553.303 kb on - strand, within Pf6N2E2_5736at 6553.431 kb on + strand, within Pf6N2E2_5736at 6553.432 kb on - strand, within Pf6N2E2_5736at 6553.432 kb on - strand, within Pf6N2E2_5736at 6553.683 kb on + strand, within Pf6N2E2_5736at 6553.727 kb on - strand, within Pf6N2E2_5736at 6553.727 kb on - strand, within Pf6N2E2_5736at 6553.798 kb on + strandat 6553.798 kb on + strandat 6553.798 kb on + strandat 6553.798 kb on + strandat 6553.798 kb on + strandat 6553.798 kb on + strandat 6553.798 kb on + strandat 6553.799 kb on - strandat 6553.799 kb on - strandat 6553.799 kb on - strandat 6553.799 kb on - strandat 6553.799 kb on - strandat 6553.799 kb on - strandat 6553.799 kb on - strandat 6553.799 kb on - strandat 6553.799 kb on - strandat 6553.799 kb on - strandat 6553.799 kb on - strandat 6553.799 kb on - strandat 6553.901 kb on + strandat 6553.902 kb on - strandat 6553.928 kb on + strandat 6553.929 kb on - strandat 6554.055 kb on + strandat 6554.055 kb on + strandat 6554.056 kb on - strandat 6554.056 kb on - strandat 6554.056 kb on - strandat 6554.056 kb on - strandat 6554.074 kb on + strandat 6554.075 kb on - strandat 6554.075 kb on - strandat 6554.677 kb on + strand, within Pf6N2E2_5737at 6554.983 kb on + strandat 6555.054 kb on + strand, within Pf6N2E2_5738at 6555.054 kb on + strand, within Pf6N2E2_5738at 6555.055 kb on - strand, within Pf6N2E2_5738at 6555.055 kb on - strand, within Pf6N2E2_5738at 6555.624 kb on + strand, within Pf6N2E2_5738at 6555.624 kb on + strand, within Pf6N2E2_5738at 6555.625 kb on - strand, within Pf6N2E2_5738at 6555.625 kb on - strand, within Pf6N2E2_5738at 6555.625 kb on - strand, within Pf6N2E2_5738at 6555.721 kb on - strand, within Pf6N2E2_5738at 6555.839 kb on + strand, within Pf6N2E2_5738at 6555.846 kb on + strand, within Pf6N2E2_5738at 6555.846 kb on + strand, within Pf6N2E2_5738at 6555.846 kb on + strand, within Pf6N2E2_5738at 6555.847 kb on - strand, within Pf6N2E2_5738at 6555.847 kb on - strand, within Pf6N2E2_5738at 6555.847 kb on - strand, within Pf6N2E2_5738

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
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6,553,257 + +0.1
6,553,257 + +1.6
6,553,257 + +0.8
6,553,258 - +0.6
6,553,258 - +1.8
6,553,258 - +0.5
6,553,258 - +1.1
6,553,302 + Pf6N2E2_5736 0.15 -0.3
6,553,302 + Pf6N2E2_5736 0.15 -0.2
6,553,302 + Pf6N2E2_5736 0.15 +0.0
6,553,302 + Pf6N2E2_5736 0.15 +0.1
6,553,303 - Pf6N2E2_5736 0.15 +0.4
6,553,303 - Pf6N2E2_5736 0.15 +0.6
6,553,303 - Pf6N2E2_5736 0.15 +0.7
6,553,431 + Pf6N2E2_5736 0.37 +0.8
6,553,432 - Pf6N2E2_5736 0.37 -1.2
6,553,432 - Pf6N2E2_5736 0.37 -0.1
6,553,683 + Pf6N2E2_5736 0.80 +0.4
6,553,727 - Pf6N2E2_5736 0.88 -0.2
6,553,727 - Pf6N2E2_5736 0.88 -0.4
6,553,798 + +0.7
6,553,798 + +0.7
6,553,798 + -0.4
6,553,798 + -0.9
6,553,798 + +0.4
6,553,798 + +1.2
6,553,798 + +0.5
6,553,799 - -0.8
6,553,799 - -0.2
6,553,799 - +0.5
6,553,799 - +0.3
6,553,799 - +0.5
6,553,799 - +0.8
6,553,799 - +0.2
6,553,799 - +0.7
6,553,799 - +0.1
6,553,799 - -1.2
6,553,799 - -0.6
6,553,799 - -0.0
6,553,901 + +1.0
6,553,902 - -0.3
6,553,928 + +1.3
6,553,929 - +0.2
6,554,055 + +0.1
6,554,055 + -0.0
6,554,056 - -0.6
6,554,056 - -0.5
6,554,056 - -0.7
6,554,056 - +0.8
6,554,074 + +0.1
6,554,075 - +1.0
6,554,075 - -0.1
6,554,677 + Pf6N2E2_5737 0.70 -0.9
6,554,983 + -1.6
6,555,054 + Pf6N2E2_5738 0.14 -0.6
6,555,054 + Pf6N2E2_5738 0.14 -0.4
6,555,055 - Pf6N2E2_5738 0.14 +0.8
6,555,055 - Pf6N2E2_5738 0.14 -0.5
6,555,624 + Pf6N2E2_5738 0.57 -3.1
6,555,624 + Pf6N2E2_5738 0.57 -0.6
6,555,625 - Pf6N2E2_5738 0.57 -0.8
6,555,625 - Pf6N2E2_5738 0.57 -0.9
6,555,625 - Pf6N2E2_5738 0.57 -0.2
6,555,721 - Pf6N2E2_5738 0.65 -0.2
6,555,839 + Pf6N2E2_5738 0.74 -0.7
6,555,846 + Pf6N2E2_5738 0.74 -1.0
6,555,846 + Pf6N2E2_5738 0.74 -0.1
6,555,846 + Pf6N2E2_5738 0.74 -0.4
6,555,847 - Pf6N2E2_5738 0.74 -0.8
6,555,847 - Pf6N2E2_5738 0.74 +0.9
6,555,847 - Pf6N2E2_5738 0.74 +0.2

Or see this region's nucleotide sequence