Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3076 and Pf6N2E2_3077 are separated by 178 nucleotides Pf6N2E2_3077 and Pf6N2E2_3078 are separated by 32 nucleotides
Pf6N2E2_3076 - Methyl-accepting chemotaxis protein, at 3,564,274 to 3,565,629
_3076
Pf6N2E2_3077 - FIG138056: a glutathione-dependent thiol reductase, at 3,565,808 to 3,566,170
_3077
Pf6N2E2_3078 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117), at 3,566,203 to 3,567,237
_3078
Position (kb)
3565
3566
3567 Strain fitness (log2 ratio)
-1
0
1 at 3564.821 kb on + strand, within Pf6N2E2_3076 at 3564.821 kb on + strand, within Pf6N2E2_3076 at 3564.821 kb on + strand, within Pf6N2E2_3076 at 3564.872 kb on + strand, within Pf6N2E2_3076 at 3564.910 kb on + strand, within Pf6N2E2_3076 at 3564.911 kb on - strand, within Pf6N2E2_3076 at 3564.911 kb on - strand, within Pf6N2E2_3076 at 3564.911 kb on - strand, within Pf6N2E2_3076 at 3564.911 kb on - strand, within Pf6N2E2_3076 at 3565.029 kb on + strand, within Pf6N2E2_3076 at 3565.029 kb on + strand, within Pf6N2E2_3076 at 3565.383 kb on + strand, within Pf6N2E2_3076 at 3565.383 kb on + strand, within Pf6N2E2_3076 at 3565.383 kb on + strand, within Pf6N2E2_3076 at 3565.384 kb on - strand, within Pf6N2E2_3076 at 3565.384 kb on - strand, within Pf6N2E2_3076 at 3565.435 kb on + strand, within Pf6N2E2_3076 at 3565.435 kb on + strand, within Pf6N2E2_3076 at 3565.435 kb on + strand, within Pf6N2E2_3076 at 3565.436 kb on - strand, within Pf6N2E2_3076 at 3565.436 kb on - strand, within Pf6N2E2_3076 at 3565.436 kb on - strand, within Pf6N2E2_3076 at 3565.436 kb on - strand, within Pf6N2E2_3076 at 3565.436 kb on - strand, within Pf6N2E2_3076 at 3565.436 kb on - strand, within Pf6N2E2_3076 at 3565.436 kb on - strand, within Pf6N2E2_3076 at 3565.437 kb on + strand, within Pf6N2E2_3076 at 3565.438 kb on - strand, within Pf6N2E2_3076 at 3565.666 kb on - strand at 3565.666 kb on - strand at 3565.830 kb on + strand at 3565.899 kb on + strand, within Pf6N2E2_3077 at 3565.899 kb on + strand, within Pf6N2E2_3077 at 3565.919 kb on + strand, within Pf6N2E2_3077 at 3566.150 kb on + strand at 3566.150 kb on + strand at 3566.150 kb on + strand at 3566.150 kb on + strand at 3566.150 kb on + strand at 3566.150 kb on + strand at 3566.150 kb on + strand at 3566.150 kb on + strand at 3566.150 kb on + strand at 3566.150 kb on + strand at 3566.150 kb on + strand at 3566.168 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 3,564,821 + Pf6N2E2_3076 0.40 -0.6 3,564,821 + Pf6N2E2_3076 0.40 -0.2 3,564,821 + Pf6N2E2_3076 0.40 -0.4 3,564,872 + Pf6N2E2_3076 0.44 +0.3 3,564,910 + Pf6N2E2_3076 0.47 +1.4 3,564,911 - Pf6N2E2_3076 0.47 +0.4 3,564,911 - Pf6N2E2_3076 0.47 -0.7 3,564,911 - Pf6N2E2_3076 0.47 -0.1 3,564,911 - Pf6N2E2_3076 0.47 -0.6 3,565,029 + Pf6N2E2_3076 0.56 -0.1 3,565,029 + Pf6N2E2_3076 0.56 +0.5 3,565,383 + Pf6N2E2_3076 0.82 +0.3 3,565,383 + Pf6N2E2_3076 0.82 +0.7 3,565,383 + Pf6N2E2_3076 0.82 -0.5 3,565,384 - Pf6N2E2_3076 0.82 +1.6 3,565,384 - Pf6N2E2_3076 0.82 -0.5 3,565,435 + Pf6N2E2_3076 0.86 +0.3 3,565,435 + Pf6N2E2_3076 0.86 -0.5 3,565,435 + Pf6N2E2_3076 0.86 +0.3 3,565,436 - Pf6N2E2_3076 0.86 +0.5 3,565,436 - Pf6N2E2_3076 0.86 +0.5 3,565,436 - Pf6N2E2_3076 0.86 +0.1 3,565,436 - Pf6N2E2_3076 0.86 +1.2 3,565,436 - Pf6N2E2_3076 0.86 -0.4 3,565,436 - Pf6N2E2_3076 0.86 -0.5 3,565,436 - Pf6N2E2_3076 0.86 +0.8 3,565,437 + Pf6N2E2_3076 0.86 -0.1 3,565,438 - Pf6N2E2_3076 0.86 +0.4 3,565,666 - +0.4 3,565,666 - +0.1 3,565,830 + +0.8 3,565,899 + Pf6N2E2_3077 0.25 -1.0 3,565,899 + Pf6N2E2_3077 0.25 -0.2 3,565,919 + Pf6N2E2_3077 0.31 +0.3 3,566,150 + +0.8 3,566,150 + -0.1 3,566,150 + +0.6 3,566,150 + -0.8 3,566,150 + -0.9 3,566,150 + -0.6 3,566,150 + +0.3 3,566,150 + -0.1 3,566,150 + -0.4 3,566,150 + +0.2 3,566,150 + -0.3 3,566,168 + +0.4
Or see this region's nucleotide sequence