Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2062

Experiment: Nickel (II) chloride 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_2061 and Pf6N2E2_2062 are separated by 834 nucleotidesPf6N2E2_2062 and Pf6N2E2_2063 are separated by 11 nucleotidesPf6N2E2_2063 and Pf6N2E2_2064 are separated by 11 nucleotides Pf6N2E2_2061 - CobW GTPase involved in cobalt insertion for B12 biosynthesis, at 2,453,260 to 2,454,324 _2061 Pf6N2E2_2062 - FIG00955561: hypothetical protein, at 2,455,159 to 2,455,347 _2062 Pf6N2E2_2063 - Predicted cobalt transporter CbtA, at 2,455,359 to 2,456,054 _2063 Pf6N2E2_2064 - Cobalt-precorrin-3b C17-methyltransferase, at 2,456,066 to 2,456,455 _2064 Position (kb) 2455 2456Strain fitness (log2 ratio) -2 -1 0 1at 2454.422 kb on - strandat 2454.422 kb on - strandat 2454.422 kb on - strandat 2454.422 kb on - strandat 2454.510 kb on + strandat 2454.511 kb on - strandat 2454.595 kb on + strandat 2454.595 kb on + strandat 2454.596 kb on - strandat 2454.596 kb on - strandat 2454.635 kb on + strandat 2454.636 kb on - strandat 2454.670 kb on + strandat 2454.670 kb on + strandat 2454.670 kb on + strandat 2454.671 kb on - strandat 2454.671 kb on - strandat 2454.671 kb on - strandat 2454.671 kb on - strandat 2454.671 kb on - strandat 2454.671 kb on - strandat 2454.739 kb on + strandat 2454.739 kb on + strandat 2454.805 kb on + strandat 2454.805 kb on + strandat 2454.805 kb on + strandat 2454.805 kb on + strandat 2454.805 kb on + strandat 2454.805 kb on + strandat 2454.806 kb on - strandat 2454.806 kb on - strandat 2454.806 kb on - strandat 2454.806 kb on - strandat 2454.846 kb on + strandat 2454.846 kb on + strandat 2454.851 kb on - strandat 2454.900 kb on + strandat 2454.901 kb on - strandat 2455.194 kb on + strand, within Pf6N2E2_2062at 2455.195 kb on - strand, within Pf6N2E2_2062at 2455.635 kb on + strand, within Pf6N2E2_2063at 2455.635 kb on + strand, within Pf6N2E2_2063at 2455.635 kb on + strand, within Pf6N2E2_2063at 2455.635 kb on + strand, within Pf6N2E2_2063at 2455.642 kb on + strand, within Pf6N2E2_2063at 2455.693 kb on - strand, within Pf6N2E2_2063at 2455.810 kb on + strand, within Pf6N2E2_2063at 2456.333 kb on + strand, within Pf6N2E2_2064at 2456.334 kb on - strand, within Pf6N2E2_2064at 2456.334 kb on - strand, within Pf6N2E2_2064at 2456.334 kb on - strand, within Pf6N2E2_2064

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
remove
2,454,422 - +0.0
2,454,422 - -0.6
2,454,422 - -0.5
2,454,422 - +0.1
2,454,510 + +0.8
2,454,511 - -0.0
2,454,595 + +0.4
2,454,595 + -1.1
2,454,596 - +1.6
2,454,596 - +0.4
2,454,635 + -0.6
2,454,636 - +0.3
2,454,670 + +0.4
2,454,670 + -0.1
2,454,670 + +0.4
2,454,671 - +0.7
2,454,671 - -0.6
2,454,671 - +0.3
2,454,671 - +0.1
2,454,671 - -0.1
2,454,671 - +0.4
2,454,739 + +1.0
2,454,739 + +0.8
2,454,805 + -0.1
2,454,805 + -1.4
2,454,805 + -0.5
2,454,805 + -0.0
2,454,805 + +0.6
2,454,805 + +0.8
2,454,806 - +0.1
2,454,806 - -1.0
2,454,806 - +0.1
2,454,806 - -0.2
2,454,846 + -0.2
2,454,846 + +1.3
2,454,851 - +0.1
2,454,900 + +0.8
2,454,901 - -0.1
2,455,194 + Pf6N2E2_2062 0.19 -0.3
2,455,195 - Pf6N2E2_2062 0.19 -0.7
2,455,635 + Pf6N2E2_2063 0.40 +0.3
2,455,635 + Pf6N2E2_2063 0.40 -0.7
2,455,635 + Pf6N2E2_2063 0.40 +1.1
2,455,635 + Pf6N2E2_2063 0.40 +0.8
2,455,642 + Pf6N2E2_2063 0.41 +0.0
2,455,693 - Pf6N2E2_2063 0.48 -0.2
2,455,810 + Pf6N2E2_2063 0.65 -2.3
2,456,333 + Pf6N2E2_2064 0.68 -1.3
2,456,334 - Pf6N2E2_2064 0.69 +0.1
2,456,334 - Pf6N2E2_2064 0.69 -0.1
2,456,334 - Pf6N2E2_2064 0.69 -1.0

Or see this region's nucleotide sequence