Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5296 and Pf1N1B4_5297 are separated by 152 nucleotides Pf1N1B4_5297 and Pf1N1B4_5298 are separated by 20 nucleotides Pf1N1B4_5298 and Pf1N1B4_5299 are separated by 38 nucleotides Pf1N1B4_5299 and Pf1N1B4_5300 are separated by 78 nucleotides
Pf1N1B4_5296 - hypothetical protein, at 50,875 to 51,123
_5296
Pf1N1B4_5297 - hypothetical protein, at 51,276 to 51,413
_5297
Pf1N1B4_5298 - hypothetical protein, at 51,434 to 51,667
_5298
Pf1N1B4_5299 - hypothetical protein, at 51,706 to 51,963
_5299
Pf1N1B4_5300 - hypothetical protein, at 52,042 to 54,108
_5300
Position (kb)
51
52 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 50.791 kb on + strand at 50.974 kb on + strand, within Pf1N1B4_5296 at 50.974 kb on + strand, within Pf1N1B4_5296 at 50.974 kb on + strand, within Pf1N1B4_5296 at 50.974 kb on + strand at 50.974 kb on + strand, within Pf1N1B4_5296 at 50.974 kb on + strand at 50.974 kb on + strand, within Pf1N1B4_5296 at 50.974 kb on + strand, within Pf1N1B4_5296 at 50.974 kb on + strand, within Pf1N1B4_5296 at 50.975 kb on - strand, within Pf1N1B4_5296 at 50.975 kb on - strand, within Pf1N1B4_5296 at 50.975 kb on - strand, within Pf1N1B4_5296 at 51.001 kb on + strand, within Pf1N1B4_5296 at 51.001 kb on + strand, within Pf1N1B4_5296 at 51.002 kb on - strand, within Pf1N1B4_5296 at 51.034 kb on - strand, within Pf1N1B4_5296 at 51.166 kb on - strand at 51.166 kb on - strand at 51.373 kb on + strand, within Pf1N1B4_5297 at 51.377 kb on + strand, within Pf1N1B4_5297 at 51.377 kb on + strand, within Pf1N1B4_5297 at 51.452 kb on + strand at 51.452 kb on + strand at 51.452 kb on + strand at 51.530 kb on - strand at 51.537 kb on + strand, within Pf1N1B4_5298 at 51.538 kb on - strand, within Pf1N1B4_5298 at 51.538 kb on - strand, within Pf1N1B4_5298 at 51.539 kb on + strand, within Pf1N1B4_5298 at 51.539 kb on + strand, within Pf1N1B4_5298 at 51.539 kb on + strand, within Pf1N1B4_5298 at 51.539 kb on + strand at 51.539 kb on + strand, within Pf1N1B4_5298 at 51.539 kb on + strand, within Pf1N1B4_5298 at 51.539 kb on + strand, within Pf1N1B4_5298 at 51.539 kb on + strand, within Pf1N1B4_5298 at 51.539 kb on + strand, within Pf1N1B4_5298 at 51.539 kb on + strand, within Pf1N1B4_5298 at 51.540 kb on - strand, within Pf1N1B4_5298 at 51.540 kb on - strand, within Pf1N1B4_5298 at 51.540 kb on - strand, within Pf1N1B4_5298 at 51.540 kb on - strand, within Pf1N1B4_5298 at 51.540 kb on - strand, within Pf1N1B4_5298 at 51.540 kb on - strand, within Pf1N1B4_5298 at 51.540 kb on - strand, within Pf1N1B4_5298 at 51.540 kb on - strand, within Pf1N1B4_5298 at 51.540 kb on - strand, within Pf1N1B4_5298 at 51.540 kb on - strand, within Pf1N1B4_5298 at 51.540 kb on - strand, within Pf1N1B4_5298 at 51.540 kb on - strand, within Pf1N1B4_5298 at 51.613 kb on - strand, within Pf1N1B4_5298 at 51.685 kb on + strand at 51.685 kb on + strand at 51.686 kb on - strand at 51.695 kb on + strand at 51.695 kb on + strand at 51.695 kb on + strand at 51.695 kb on + strand at 51.695 kb on + strand at 51.696 kb on - strand at 51.696 kb on - strand at 51.699 kb on + strand at 51.699 kb on + strand at 51.699 kb on + strand at 51.699 kb on + strand at 51.700 kb on - strand at 51.700 kb on - strand at 51.821 kb on + strand, within Pf1N1B4_5299 at 51.831 kb on + strand, within Pf1N1B4_5299 at 51.832 kb on + strand at 51.832 kb on + strand, within Pf1N1B4_5299 at 51.832 kb on + strand, within Pf1N1B4_5299 at 51.832 kb on + strand, within Pf1N1B4_5299 at 51.885 kb on - strand at 51.885 kb on - strand, within Pf1N1B4_5299 at 51.931 kb on + strand, within Pf1N1B4_5299 at 51.932 kb on - strand, within Pf1N1B4_5299 at 52.040 kb on - strand at 52.075 kb on + strand at 52.253 kb on - strand, within Pf1N1B4_5300 at 52.253 kb on - strand, within Pf1N1B4_5300 at 52.312 kb on - strand, within Pf1N1B4_5300 at 52.520 kb on + strand, within Pf1N1B4_5300 at 52.520 kb on + strand, within Pf1N1B4_5300 at 52.520 kb on + strand, within Pf1N1B4_5300 at 52.520 kb on + strand, within Pf1N1B4_5300 at 52.521 kb on - strand, within Pf1N1B4_5300 at 52.521 kb on - strand, within Pf1N1B4_5300 at 52.521 kb on - strand, within Pf1N1B4_5300 at 52.521 kb on - strand, within Pf1N1B4_5300 at 52.777 kb on + strand, within Pf1N1B4_5300 at 52.778 kb on - strand, within Pf1N1B4_5300 at 52.778 kb on - strand, within Pf1N1B4_5300 at 52.778 kb on - strand, within Pf1N1B4_5300 at 52.867 kb on + strand, within Pf1N1B4_5300 at 52.867 kb on + strand, within Pf1N1B4_5300 at 52.867 kb on + strand, within Pf1N1B4_5300 at 52.868 kb on - strand, within Pf1N1B4_5300 at 52.868 kb on - strand, within Pf1N1B4_5300
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 50,791 + +0.4 50,974 + Pf1N1B4_5296 0.40 +0.1 50,974 + Pf1N1B4_5296 0.40 +0.4 50,974 + Pf1N1B4_5296 0.40 +0.4 50,974 + +2.0 50,974 + Pf1N1B4_5296 0.40 +3.0 50,974 + +1.0 50,974 + Pf1N1B4_5296 0.40 +3.3 50,974 + Pf1N1B4_5296 0.40 -0.1 50,974 + Pf1N1B4_5296 0.40 +0.5 50,975 - Pf1N1B4_5296 0.40 +1.2 50,975 - Pf1N1B4_5296 0.40 -0.5 50,975 - Pf1N1B4_5296 0.40 +1.6 51,001 + Pf1N1B4_5296 0.51 +1.4 51,001 + Pf1N1B4_5296 0.51 -1.7 51,002 - Pf1N1B4_5296 0.51 +1.6 51,034 - Pf1N1B4_5296 0.64 +0.6 51,166 - +0.8 51,166 - +0.2 51,373 + Pf1N1B4_5297 0.70 -0.3 51,377 + Pf1N1B4_5297 0.73 -2.7 51,377 + Pf1N1B4_5297 0.73 +1.0 51,452 + +1.0 51,452 + -0.5 51,452 + +0.2 51,530 - +1.0 51,537 + Pf1N1B4_5298 0.44 -0.0 51,538 - Pf1N1B4_5298 0.44 -0.2 51,538 - Pf1N1B4_5298 0.44 -0.1 51,539 + Pf1N1B4_5298 0.45 +1.3 51,539 + Pf1N1B4_5298 0.45 +0.1 51,539 + Pf1N1B4_5298 0.45 -1.2 51,539 + +1.0 51,539 + Pf1N1B4_5298 0.45 -0.8 51,539 + Pf1N1B4_5298 0.45 -1.0 51,539 + Pf1N1B4_5298 0.45 +1.4 51,539 + Pf1N1B4_5298 0.45 +1.4 51,539 + Pf1N1B4_5298 0.45 +0.4 51,539 + Pf1N1B4_5298 0.45 -1.6 51,540 - Pf1N1B4_5298 0.45 -0.0 51,540 - Pf1N1B4_5298 0.45 -1.6 51,540 - Pf1N1B4_5298 0.45 -0.6 51,540 - Pf1N1B4_5298 0.45 +4.3 51,540 - Pf1N1B4_5298 0.45 -0.7 51,540 - Pf1N1B4_5298 0.45 +1.0 51,540 - Pf1N1B4_5298 0.45 -1.7 51,540 - Pf1N1B4_5298 0.45 +0.2 51,540 - Pf1N1B4_5298 0.45 +0.7 51,540 - Pf1N1B4_5298 0.45 +2.2 51,540 - Pf1N1B4_5298 0.45 +1.4 51,540 - Pf1N1B4_5298 0.45 -0.5 51,613 - Pf1N1B4_5298 0.76 +2.0 51,685 + +1.5 51,685 + +0.7 51,686 - +0.4 51,695 + -0.2 51,695 + -0.0 51,695 + +0.5 51,695 + -0.4 51,695 + +0.8 51,696 - +2.0 51,696 - -0.6 51,699 + +1.7 51,699 + -0.7 51,699 + +0.6 51,699 + -1.0 51,700 - +0.1 51,700 - -0.2 51,821 + Pf1N1B4_5299 0.45 -0.2 51,831 + Pf1N1B4_5299 0.48 +0.2 51,832 + +1.4 51,832 + Pf1N1B4_5299 0.49 -0.5 51,832 + Pf1N1B4_5299 0.49 -0.2 51,832 + Pf1N1B4_5299 0.49 +0.4 51,885 - +3.0 51,885 - Pf1N1B4_5299 0.69 -1.1 51,931 + Pf1N1B4_5299 0.87 -1.0 51,932 - Pf1N1B4_5299 0.88 -1.2 52,040 - +0.2 52,075 + +2.7 52,253 - Pf1N1B4_5300 0.10 +0.4 52,253 - Pf1N1B4_5300 0.10 +0.2 52,312 - Pf1N1B4_5300 0.13 -0.5 52,520 + Pf1N1B4_5300 0.23 +0.4 52,520 + Pf1N1B4_5300 0.23 -0.8 52,520 + Pf1N1B4_5300 0.23 +0.0 52,520 + Pf1N1B4_5300 0.23 -0.1 52,521 - Pf1N1B4_5300 0.23 -0.6 52,521 - Pf1N1B4_5300 0.23 -0.1 52,521 - Pf1N1B4_5300 0.23 +0.1 52,521 - Pf1N1B4_5300 0.23 +0.4 52,777 + Pf1N1B4_5300 0.36 +0.6 52,778 - Pf1N1B4_5300 0.36 +1.2 52,778 - Pf1N1B4_5300 0.36 +0.8 52,778 - Pf1N1B4_5300 0.36 +0.5 52,867 + Pf1N1B4_5300 0.40 -0.8 52,867 + Pf1N1B4_5300 0.40 +0.2 52,867 + Pf1N1B4_5300 0.40 -0.6 52,868 - Pf1N1B4_5300 0.40 -0.2 52,868 - Pf1N1B4_5300 0.40 -0.3
Or see this region's nucleotide sequence