Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4200

Experiment: pyruvate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_4199 and Pf1N1B4_4200 are separated by 126 nucleotidesPf1N1B4_4200 and Pf1N1B4_4201 overlap by 26 nucleotides Pf1N1B4_4199 - Protocatechuate 4,5-dioxygenase beta chain (EC 1.13.11.8), at 4,650,399 to 4,651,661 _4199 Pf1N1B4_4200 - PhaK-like protein, at 4,651,788 to 4,653,035 _4200 Pf1N1B4_4201 - Transcriptional regulator, LysR family, at 4,653,010 to 4,654,245 _4201 Position (kb) 4651 4652 4653 4654Strain fitness (log2 ratio) -2 -1 0 1at 4651.183 kb on - strand, within Pf1N1B4_4199at 4651.183 kb on - strand, within Pf1N1B4_4199at 4651.185 kb on + strand, within Pf1N1B4_4199at 4651.185 kb on + strand, within Pf1N1B4_4199at 4651.185 kb on + strand, within Pf1N1B4_4199at 4651.503 kb on + strand, within Pf1N1B4_4199at 4651.504 kb on - strand, within Pf1N1B4_4199at 4651.569 kb on + strandat 4651.783 kb on + strandat 4651.784 kb on - strandat 4651.912 kb on - strandat 4652.215 kb on + strand, within Pf1N1B4_4200at 4652.215 kb on + strand, within Pf1N1B4_4200at 4652.216 kb on - strandat 4652.298 kb on + strand, within Pf1N1B4_4200at 4652.484 kb on + strand, within Pf1N1B4_4200at 4652.485 kb on - strand, within Pf1N1B4_4200at 4652.485 kb on - strand, within Pf1N1B4_4200at 4652.636 kb on + strand, within Pf1N1B4_4200at 4652.643 kb on + strandat 4652.727 kb on + strand, within Pf1N1B4_4200at 4652.728 kb on - strand, within Pf1N1B4_4200at 4652.728 kb on - strandat 4652.740 kb on - strand, within Pf1N1B4_4200at 4652.829 kb on + strand, within Pf1N1B4_4200at 4653.166 kb on + strandat 4653.485 kb on + strand, within Pf1N1B4_4201at 4653.486 kb on - strand, within Pf1N1B4_4201at 4653.486 kb on - strand, within Pf1N1B4_4201at 4653.585 kb on + strand, within Pf1N1B4_4201at 4653.586 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
remove
4,651,183 - Pf1N1B4_4199 0.62 +0.1
4,651,183 - Pf1N1B4_4199 0.62 -0.0
4,651,185 + Pf1N1B4_4199 0.62 -1.7
4,651,185 + Pf1N1B4_4199 0.62 -0.8
4,651,185 + Pf1N1B4_4199 0.62 +0.4
4,651,503 + Pf1N1B4_4199 0.87 +1.1
4,651,504 - Pf1N1B4_4199 0.87 +0.6
4,651,569 + -1.0
4,651,783 + +0.8
4,651,784 - +0.1
4,651,912 - -0.9
4,652,215 + Pf1N1B4_4200 0.34 +0.2
4,652,215 + Pf1N1B4_4200 0.34 -0.8
4,652,216 - +0.8
4,652,298 + Pf1N1B4_4200 0.41 -1.0
4,652,484 + Pf1N1B4_4200 0.56 +0.3
4,652,485 - Pf1N1B4_4200 0.56 -1.6
4,652,485 - Pf1N1B4_4200 0.56 -0.2
4,652,636 + Pf1N1B4_4200 0.68 -0.6
4,652,643 + +0.0
4,652,727 + Pf1N1B4_4200 0.75 +0.2
4,652,728 - Pf1N1B4_4200 0.75 -1.6
4,652,728 - -1.6
4,652,740 - Pf1N1B4_4200 0.76 -1.5
4,652,829 + Pf1N1B4_4200 0.83 -0.9
4,653,166 + +0.8
4,653,485 + Pf1N1B4_4201 0.38 -1.6
4,653,486 - Pf1N1B4_4201 0.39 -0.8
4,653,486 - Pf1N1B4_4201 0.39 -0.3
4,653,585 + Pf1N1B4_4201 0.47 -0.2
4,653,586 - -2.0

Or see this region's nucleotide sequence