Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1239

Experiment: pyruvate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_1238 and Pf1N1B4_1239 are separated by 65 nucleotidesPf1N1B4_1239 and Pf1N1B4_1240 are separated by 139 nucleotides Pf1N1B4_1238 - Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27), at 1,415,326 to 1,416,819 _1238 Pf1N1B4_1239 - Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18), at 1,416,885 to 1,418,234 _1239 Pf1N1B4_1240 - LysR family transcriptional regulator PA0133, at 1,418,374 to 1,419,294 _1240 Position (kb) 1416 1417 1418 1419Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1415.959 kb on + strand, within Pf1N1B4_1238at 1415.959 kb on + strand, within Pf1N1B4_1238at 1415.960 kb on - strand, within Pf1N1B4_1238at 1415.960 kb on - strand, within Pf1N1B4_1238at 1415.960 kb on - strand, within Pf1N1B4_1238at 1415.960 kb on - strandat 1416.122 kb on + strand, within Pf1N1B4_1238at 1416.123 kb on - strand, within Pf1N1B4_1238at 1416.123 kb on - strand, within Pf1N1B4_1238at 1416.128 kb on + strand, within Pf1N1B4_1238at 1416.129 kb on - strand, within Pf1N1B4_1238at 1416.129 kb on - strand, within Pf1N1B4_1238at 1416.129 kb on - strand, within Pf1N1B4_1238at 1416.312 kb on + strand, within Pf1N1B4_1238at 1416.344 kb on + strand, within Pf1N1B4_1238at 1416.344 kb on + strand, within Pf1N1B4_1238at 1416.344 kb on + strand, within Pf1N1B4_1238at 1416.345 kb on - strand, within Pf1N1B4_1238at 1416.345 kb on - strand, within Pf1N1B4_1238at 1416.345 kb on - strand, within Pf1N1B4_1238at 1416.384 kb on + strand, within Pf1N1B4_1238at 1416.387 kb on + strandat 1416.387 kb on + strand, within Pf1N1B4_1238at 1416.387 kb on + strand, within Pf1N1B4_1238at 1416.388 kb on - strand, within Pf1N1B4_1238at 1416.388 kb on - strand, within Pf1N1B4_1238at 1416.455 kb on + strand, within Pf1N1B4_1238at 1416.869 kb on - strandat 1416.869 kb on - strandat 1416.869 kb on - strandat 1416.869 kb on - strandat 1416.869 kb on - strandat 1416.869 kb on - strandat 1416.870 kb on + strandat 1416.871 kb on - strandat 1416.871 kb on - strandat 1416.871 kb on - strandat 1416.872 kb on + strandat 1416.872 kb on + strandat 1416.872 kb on + strandat 1416.872 kb on + strandat 1416.872 kb on + strandat 1416.872 kb on + strandat 1416.872 kb on + strandat 1416.872 kb on + strandat 1416.872 kb on + strandat 1416.872 kb on + strandat 1416.872 kb on + strandat 1416.872 kb on + strandat 1416.872 kb on + strandat 1416.872 kb on + strandat 1416.872 kb on + strandat 1416.872 kb on + strandat 1416.872 kb on + strandat 1416.872 kb on + strandat 1416.872 kb on + strandat 1416.872 kb on + strandat 1416.872 kb on + strandat 1416.872 kb on + strandat 1416.872 kb on + strandat 1416.873 kb on - strandat 1416.873 kb on - strandat 1416.873 kb on - strandat 1416.873 kb on - strandat 1416.873 kb on - strandat 1416.873 kb on - strandat 1416.873 kb on - strandat 1416.873 kb on - strandat 1416.873 kb on - strandat 1416.873 kb on - strandat 1416.873 kb on - strandat 1416.873 kb on - strandat 1416.873 kb on - strandat 1416.873 kb on - strandat 1416.873 kb on - strandat 1416.873 kb on - strandat 1416.873 kb on - strandat 1416.997 kb on + strandat 1416.997 kb on + strandat 1416.997 kb on + strandat 1416.998 kb on - strandat 1417.093 kb on + strand, within Pf1N1B4_1239at 1417.093 kb on + strand, within Pf1N1B4_1239at 1417.094 kb on - strand, within Pf1N1B4_1239at 1417.097 kb on + strand, within Pf1N1B4_1239at 1417.098 kb on - strand, within Pf1N1B4_1239at 1417.098 kb on - strand, within Pf1N1B4_1239at 1417.098 kb on - strand, within Pf1N1B4_1239at 1417.098 kb on - strand, within Pf1N1B4_1239at 1417.098 kb on - strand, within Pf1N1B4_1239at 1417.098 kb on - strand, within Pf1N1B4_1239at 1417.249 kb on + strand, within Pf1N1B4_1239at 1417.249 kb on + strand, within Pf1N1B4_1239at 1417.249 kb on + strand, within Pf1N1B4_1239at 1417.249 kb on + strand, within Pf1N1B4_1239at 1417.249 kb on + strand, within Pf1N1B4_1239at 1417.250 kb on - strand, within Pf1N1B4_1239at 1417.250 kb on - strand, within Pf1N1B4_1239at 1417.250 kb on - strand, within Pf1N1B4_1239at 1417.312 kb on + strand, within Pf1N1B4_1239at 1417.312 kb on + strand, within Pf1N1B4_1239at 1417.312 kb on + strand, within Pf1N1B4_1239at 1417.312 kb on + strand, within Pf1N1B4_1239at 1417.312 kb on + strand, within Pf1N1B4_1239at 1417.312 kb on + strand, within Pf1N1B4_1239at 1417.313 kb on - strand, within Pf1N1B4_1239at 1417.313 kb on - strand, within Pf1N1B4_1239at 1417.313 kb on - strand, within Pf1N1B4_1239at 1417.313 kb on - strand, within Pf1N1B4_1239at 1417.313 kb on - strand, within Pf1N1B4_1239at 1417.382 kb on + strand, within Pf1N1B4_1239at 1417.382 kb on + strand, within Pf1N1B4_1239at 1417.382 kb on + strand, within Pf1N1B4_1239at 1417.382 kb on + strand, within Pf1N1B4_1239at 1417.382 kb on + strand, within Pf1N1B4_1239at 1417.382 kb on + strand, within Pf1N1B4_1239at 1417.383 kb on - strand, within Pf1N1B4_1239at 1417.383 kb on - strand, within Pf1N1B4_1239at 1417.383 kb on - strand, within Pf1N1B4_1239at 1417.383 kb on - strand, within Pf1N1B4_1239at 1417.383 kb on - strand, within Pf1N1B4_1239at 1417.383 kb on - strand, within Pf1N1B4_1239at 1417.383 kb on - strand, within Pf1N1B4_1239at 1417.383 kb on - strand, within Pf1N1B4_1239at 1417.511 kb on - strand, within Pf1N1B4_1239at 1417.511 kb on - strand, within Pf1N1B4_1239at 1417.835 kb on - strand, within Pf1N1B4_1239at 1417.835 kb on - strand, within Pf1N1B4_1239at 1417.982 kb on - strand, within Pf1N1B4_1239at 1417.982 kb on - strand, within Pf1N1B4_1239at 1418.074 kb on + strand, within Pf1N1B4_1239at 1418.075 kb on - strand, within Pf1N1B4_1239at 1418.165 kb on - strandat 1418.165 kb on - strandat 1418.165 kb on - strandat 1418.256 kb on + strandat 1418.290 kb on + strandat 1418.306 kb on + strandat 1418.306 kb on + strandat 1418.306 kb on + strandat 1418.608 kb on + strand, within Pf1N1B4_1240at 1418.609 kb on - strand, within Pf1N1B4_1240at 1418.627 kb on + strand, within Pf1N1B4_1240at 1418.627 kb on + strand, within Pf1N1B4_1240at 1418.628 kb on - strand, within Pf1N1B4_1240at 1418.628 kb on - strand, within Pf1N1B4_1240at 1418.628 kb on - strand, within Pf1N1B4_1240at 1418.628 kb on - strand, within Pf1N1B4_1240at 1418.628 kb on - strand, within Pf1N1B4_1240at 1418.630 kb on + strand, within Pf1N1B4_1240at 1418.630 kb on + strand, within Pf1N1B4_1240at 1418.630 kb on + strand, within Pf1N1B4_1240at 1418.630 kb on + strand, within Pf1N1B4_1240at 1418.631 kb on - strand, within Pf1N1B4_1240at 1418.631 kb on - strand, within Pf1N1B4_1240at 1418.784 kb on - strand, within Pf1N1B4_1240at 1418.784 kb on - strand, within Pf1N1B4_1240at 1418.784 kb on - strand, within Pf1N1B4_1240at 1418.894 kb on - strand, within Pf1N1B4_1240at 1418.905 kb on + strand, within Pf1N1B4_1240at 1418.905 kb on + strand, within Pf1N1B4_1240at 1418.926 kb on + strand, within Pf1N1B4_1240at 1418.926 kb on + strand, within Pf1N1B4_1240at 1418.927 kb on - strand, within Pf1N1B4_1240at 1418.927 kb on - strandat 1418.927 kb on - strand, within Pf1N1B4_1240at 1418.927 kb on - strand, within Pf1N1B4_1240at 1418.953 kb on + strand, within Pf1N1B4_1240at 1418.953 kb on + strand, within Pf1N1B4_1240at 1418.953 kb on + strand, within Pf1N1B4_1240at 1418.953 kb on + strand, within Pf1N1B4_1240at 1418.953 kb on + strand, within Pf1N1B4_1240at 1418.954 kb on - strand, within Pf1N1B4_1240at 1418.954 kb on - strand, within Pf1N1B4_1240at 1418.954 kb on - strand, within Pf1N1B4_1240at 1418.957 kb on + strand, within Pf1N1B4_1240at 1418.957 kb on + strandat 1418.957 kb on + strand, within Pf1N1B4_1240at 1418.958 kb on - strand, within Pf1N1B4_1240at 1418.958 kb on - strand, within Pf1N1B4_1240at 1418.958 kb on - strand, within Pf1N1B4_1240at 1418.958 kb on - strandat 1418.958 kb on - strand, within Pf1N1B4_1240at 1419.046 kb on + strand, within Pf1N1B4_1240at 1419.047 kb on - strandat 1419.118 kb on + strand, within Pf1N1B4_1240at 1419.118 kb on + strand, within Pf1N1B4_1240at 1419.118 kb on + strand, within Pf1N1B4_1240at 1419.127 kb on + strand, within Pf1N1B4_1240at 1419.142 kb on + strand, within Pf1N1B4_1240at 1419.202 kb on + strand, within Pf1N1B4_1240at 1419.203 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
remove
1,415,959 + Pf1N1B4_1238 0.42 -2.2
1,415,959 + Pf1N1B4_1238 0.42 -0.2
1,415,960 - Pf1N1B4_1238 0.42 +0.8
1,415,960 - Pf1N1B4_1238 0.42 +0.2
1,415,960 - Pf1N1B4_1238 0.42 +1.1
1,415,960 - +1.4
1,416,122 + Pf1N1B4_1238 0.53 +0.4
1,416,123 - Pf1N1B4_1238 0.53 -1.0
1,416,123 - Pf1N1B4_1238 0.53 +0.3
1,416,128 + Pf1N1B4_1238 0.54 +0.5
1,416,129 - Pf1N1B4_1238 0.54 -0.6
1,416,129 - Pf1N1B4_1238 0.54 -0.6
1,416,129 - Pf1N1B4_1238 0.54 +0.9
1,416,312 + Pf1N1B4_1238 0.66 +1.1
1,416,344 + Pf1N1B4_1238 0.68 -0.9
1,416,344 + Pf1N1B4_1238 0.68 +0.9
1,416,344 + Pf1N1B4_1238 0.68 -0.6
1,416,345 - Pf1N1B4_1238 0.68 +0.0
1,416,345 - Pf1N1B4_1238 0.68 +0.8
1,416,345 - Pf1N1B4_1238 0.68 -1.4
1,416,384 + Pf1N1B4_1238 0.71 +0.2
1,416,387 + +1.4
1,416,387 + Pf1N1B4_1238 0.71 -0.6
1,416,387 + Pf1N1B4_1238 0.71 -1.8
1,416,388 - Pf1N1B4_1238 0.71 -0.9
1,416,388 - Pf1N1B4_1238 0.71 +1.4
1,416,455 + Pf1N1B4_1238 0.76 -1.0
1,416,869 - -0.2
1,416,869 - -2.0
1,416,869 - -1.0
1,416,869 - +0.4
1,416,869 - +1.4
1,416,869 - +0.7
1,416,870 + +0.2
1,416,871 - -2.0
1,416,871 - -0.2
1,416,871 - +0.1
1,416,872 + -0.4
1,416,872 + +1.4
1,416,872 + -0.6
1,416,872 + +1.9
1,416,872 + +0.8
1,416,872 + -0.8
1,416,872 + +0.4
1,416,872 + +2.0
1,416,872 + +0.1
1,416,872 + +2.0
1,416,872 + -0.6
1,416,872 + -0.2
1,416,872 + -0.9
1,416,872 + +0.7
1,416,872 + +3.4
1,416,872 + +0.1
1,416,872 + -1.2
1,416,872 + -0.2
1,416,872 + -0.6
1,416,872 + -1.0
1,416,872 + -0.5
1,416,872 + +0.4
1,416,872 + -1.0
1,416,873 - -1.6
1,416,873 - +0.4
1,416,873 - -1.7
1,416,873 - -0.7
1,416,873 - -0.2
1,416,873 - -1.5
1,416,873 - +3.4
1,416,873 - +1.4
1,416,873 - -0.3
1,416,873 - -0.6
1,416,873 - +0.0
1,416,873 - +0.2
1,416,873 - -1.2
1,416,873 - +1.4
1,416,873 - -0.2
1,416,873 - +0.7
1,416,873 - -1.7
1,416,997 + +0.4
1,416,997 + +0.8
1,416,997 + +0.4
1,416,998 - +1.4
1,417,093 + Pf1N1B4_1239 0.15 -2.3
1,417,093 + Pf1N1B4_1239 0.15 +1.2
1,417,094 - Pf1N1B4_1239 0.15 -0.4
1,417,097 + Pf1N1B4_1239 0.16 -3.2
1,417,098 - Pf1N1B4_1239 0.16 -1.3
1,417,098 - Pf1N1B4_1239 0.16 +0.3
1,417,098 - Pf1N1B4_1239 0.16 -0.9
1,417,098 - Pf1N1B4_1239 0.16 -0.8
1,417,098 - Pf1N1B4_1239 0.16 -1.2
1,417,098 - Pf1N1B4_1239 0.16 +1.2
1,417,249 + Pf1N1B4_1239 0.27 -0.3
1,417,249 + Pf1N1B4_1239 0.27 -0.7
1,417,249 + Pf1N1B4_1239 0.27 -1.2
1,417,249 + Pf1N1B4_1239 0.27 +0.2
1,417,249 + Pf1N1B4_1239 0.27 -1.9
1,417,250 - Pf1N1B4_1239 0.27 -0.9
1,417,250 - Pf1N1B4_1239 0.27 -1.6
1,417,250 - Pf1N1B4_1239 0.27 -1.4
1,417,312 + Pf1N1B4_1239 0.32 -0.2
1,417,312 + Pf1N1B4_1239 0.32 +1.1
1,417,312 + Pf1N1B4_1239 0.32 -0.2
1,417,312 + Pf1N1B4_1239 0.32 +1.4
1,417,312 + Pf1N1B4_1239 0.32 -0.0
1,417,312 + Pf1N1B4_1239 0.32 +0.1
1,417,313 - Pf1N1B4_1239 0.32 -0.9
1,417,313 - Pf1N1B4_1239 0.32 +0.1
1,417,313 - Pf1N1B4_1239 0.32 -0.6
1,417,313 - Pf1N1B4_1239 0.32 -0.2
1,417,313 - Pf1N1B4_1239 0.32 +0.4
1,417,382 + Pf1N1B4_1239 0.37 -0.9
1,417,382 + Pf1N1B4_1239 0.37 -0.8
1,417,382 + Pf1N1B4_1239 0.37 -0.9
1,417,382 + Pf1N1B4_1239 0.37 -1.2
1,417,382 + Pf1N1B4_1239 0.37 -0.0
1,417,382 + Pf1N1B4_1239 0.37 -0.2
1,417,383 - Pf1N1B4_1239 0.37 -0.6
1,417,383 - Pf1N1B4_1239 0.37 +0.4
1,417,383 - Pf1N1B4_1239 0.37 -1.2
1,417,383 - Pf1N1B4_1239 0.37 -0.3
1,417,383 - Pf1N1B4_1239 0.37 +0.1
1,417,383 - Pf1N1B4_1239 0.37 -0.2
1,417,383 - Pf1N1B4_1239 0.37 -1.6
1,417,383 - Pf1N1B4_1239 0.37 -0.0
1,417,511 - Pf1N1B4_1239 0.46 +0.4
1,417,511 - Pf1N1B4_1239 0.46 -0.4
1,417,835 - Pf1N1B4_1239 0.70 -1.8
1,417,835 - Pf1N1B4_1239 0.70 +0.4
1,417,982 - Pf1N1B4_1239 0.81 +0.1
1,417,982 - Pf1N1B4_1239 0.81 -0.6
1,418,074 + Pf1N1B4_1239 0.88 -1.9
1,418,075 - Pf1N1B4_1239 0.88 -0.6
1,418,165 - +0.5
1,418,165 - -1.1
1,418,165 - +0.4
1,418,256 + +2.1
1,418,290 + -0.2
1,418,306 + -2.0
1,418,306 + -0.9
1,418,306 + -1.2
1,418,608 + Pf1N1B4_1240 0.25 -0.2
1,418,609 - Pf1N1B4_1240 0.26 +2.1
1,418,627 + Pf1N1B4_1240 0.27 -0.8
1,418,627 + Pf1N1B4_1240 0.27 -1.6
1,418,628 - Pf1N1B4_1240 0.28 +0.2
1,418,628 - Pf1N1B4_1240 0.28 +1.4
1,418,628 - Pf1N1B4_1240 0.28 -1.4
1,418,628 - Pf1N1B4_1240 0.28 +0.7
1,418,628 - Pf1N1B4_1240 0.28 +1.8
1,418,630 + Pf1N1B4_1240 0.28 -1.1
1,418,630 + Pf1N1B4_1240 0.28 +0.9
1,418,630 + Pf1N1B4_1240 0.28 +0.4
1,418,630 + Pf1N1B4_1240 0.28 +0.5
1,418,631 - Pf1N1B4_1240 0.28 -0.3
1,418,631 - Pf1N1B4_1240 0.28 -0.3
1,418,784 - Pf1N1B4_1240 0.45 -1.4
1,418,784 - Pf1N1B4_1240 0.45 +0.9
1,418,784 - Pf1N1B4_1240 0.45 +0.4
1,418,894 - Pf1N1B4_1240 0.56 +0.4
1,418,905 + Pf1N1B4_1240 0.58 -1.0
1,418,905 + Pf1N1B4_1240 0.58 -1.2
1,418,926 + Pf1N1B4_1240 0.60 -0.6
1,418,926 + Pf1N1B4_1240 0.60 +1.4
1,418,927 - Pf1N1B4_1240 0.60 +1.2
1,418,927 - +0.8
1,418,927 - Pf1N1B4_1240 0.60 -1.0
1,418,927 - Pf1N1B4_1240 0.60 +0.4
1,418,953 + Pf1N1B4_1240 0.63 -0.6
1,418,953 + Pf1N1B4_1240 0.63 -0.0
1,418,953 + Pf1N1B4_1240 0.63 -0.2
1,418,953 + Pf1N1B4_1240 0.63 +0.4
1,418,953 + Pf1N1B4_1240 0.63 +0.8
1,418,954 - Pf1N1B4_1240 0.63 -0.1
1,418,954 - Pf1N1B4_1240 0.63 +1.0
1,418,954 - Pf1N1B4_1240 0.63 -0.9
1,418,957 + Pf1N1B4_1240 0.63 +0.1
1,418,957 + -0.2
1,418,957 + Pf1N1B4_1240 0.63 +1.0
1,418,958 - Pf1N1B4_1240 0.63 +1.1
1,418,958 - Pf1N1B4_1240 0.63 +0.7
1,418,958 - Pf1N1B4_1240 0.63 -0.9
1,418,958 - +1.0
1,418,958 - Pf1N1B4_1240 0.63 +0.8
1,419,046 + Pf1N1B4_1240 0.73 +0.1
1,419,047 - +0.4
1,419,118 + Pf1N1B4_1240 0.81 -0.6
1,419,118 + Pf1N1B4_1240 0.81 +1.0
1,419,118 + Pf1N1B4_1240 0.81 -1.5
1,419,127 + Pf1N1B4_1240 0.82 +0.2
1,419,142 + Pf1N1B4_1240 0.83 -0.0
1,419,202 + Pf1N1B4_1240 0.90 +1.6
1,419,203 - -0.8

Or see this region's nucleotide sequence