Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS12160

Experiment: R2A with Manganese (II) chloride tetrahydrate 1.25 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Manganese (II) chloride tetrahydrate 1.25 mM
2,705,177	-		LRK54_RS12150	0.74	-0.6
2,705,239	+		LRK54_RS12150	0.79	-1.7
2,705,240	-		LRK54_RS12150	0.79	-0.7
2,705,240	-		LRK54_RS12150	0.79	-0.2
2,705,240	-		LRK54_RS12150	0.79	+0.4
2,705,240	-		LRK54_RS12150	0.79	-1.4
2,705,240	-		LRK54_RS12150	0.79	+0.1
2,705,284	+		LRK54_RS12150	0.82	+0.2
2,705,392	+		LRK54_RS12150	0.89	-0.3
2,705,392	+		LRK54_RS12150	0.89	-0.1
2,705,392	+		LRK54_RS12150	0.89	-0.7
2,705,392	+		LRK54_RS12150	0.89	-0.2
2,705,392	+		LRK54_RS12150	0.89	-0.1
2,705,393	-		LRK54_RS12150	0.89	-0.7
2,705,393	-		LRK54_RS12150	0.89	-0.0
2,705,393	-		LRK54_RS12150	0.89	-0.0
2,705,554	+				-0.6
2,705,554	+				-0.1
2,705,554	+				-0.0
2,705,554	+				-2.1
2,705,554	+				-1.8
2,705,554	+				-1.0
2,705,554	+				-0.1
2,705,554	+				-0.4
2,705,554	+				-0.4
2,705,554	+				-0.0
2,705,554	+				-0.4
2,705,554	+				-0.8
2,705,555	-				-0.3
2,705,555	-				-0.4
2,705,555	-				+0.2
2,705,555	-				-0.1
2,705,555	-				+0.1
2,705,555	-				-1.6
2,705,555	-				-0.3
2,705,555	-				-0.8
2,705,555	-				+0.0
2,705,555	-				-0.9
2,705,623	+		LRK54_RS12155	0.11	-0.5
2,705,623	+		LRK54_RS12155	0.11	+1.2
2,705,623	+		LRK54_RS12155	0.11	-0.5
2,705,623	+		LRK54_RS12155	0.11	-0.0
2,705,624	-		LRK54_RS12155	0.12	+0.2
2,705,636	-		LRK54_RS12155	0.14	-0.5
2,705,636	-		LRK54_RS12155	0.14	+0.9
2,705,821	+		LRK54_RS12155	0.55	-0.6
2,705,821	+		LRK54_RS12155	0.55	-1.7
2,705,821	+		LRK54_RS12155	0.55	+0.0
2,705,821	+		LRK54_RS12155	0.55	+0.1
2,705,821	+		LRK54_RS12155	0.55	-0.0
2,705,822	-		LRK54_RS12155	0.55	-1.0
2,705,822	-		LRK54_RS12155	0.55	-2.1
2,705,822	-		LRK54_RS12155	0.55	+0.2
2,705,822	-		LRK54_RS12155	0.55	-2.2
2,705,822	-		LRK54_RS12155	0.55	-1.4
2,705,822	-		LRK54_RS12155	0.55	+0.2
2,705,878	+		LRK54_RS12155	0.68	+0.5
2,705,878	+		LRK54_RS12155	0.68	-0.4
2,705,878	+		LRK54_RS12155	0.68	-0.3
2,705,878	+		LRK54_RS12155	0.68	-0.6
2,705,878	+		LRK54_RS12155	0.68	-1.5
2,705,878	+		LRK54_RS12155	0.68	-0.7
2,705,878	+		LRK54_RS12155	0.68	+0.4
2,705,878	+		LRK54_RS12155	0.68	-0.8
2,705,878	+		LRK54_RS12155	0.68	+0.3
2,705,878	+		LRK54_RS12155	0.68	+1.1
2,705,878	+		LRK54_RS12155	0.68	-2.1
2,705,878	+		LRK54_RS12155	0.68	-0.6
2,705,878	+		LRK54_RS12155	0.68	+0.7
2,705,878	+		LRK54_RS12155	0.68	+1.1
2,705,878	+		LRK54_RS12155	0.68	-0.1
2,705,878	+		LRK54_RS12155	0.68	-0.3
2,705,878	+		LRK54_RS12155	0.68	-1.0
2,705,879	-		LRK54_RS12155	0.68	-0.7
2,705,879	-		LRK54_RS12155	0.68	+0.1
2,705,879	-		LRK54_RS12155	0.68	-0.3
2,705,879	-		LRK54_RS12155	0.68	+0.5
2,705,879	-		LRK54_RS12155	0.68	-0.3
2,705,879	-		LRK54_RS12155	0.68	-0.9
2,705,879	-		LRK54_RS12155	0.68	-0.2
2,705,879	-		LRK54_RS12155	0.68	-0.2
2,705,879	-		LRK54_RS12155	0.68	-0.6
2,705,879	-		LRK54_RS12155	0.68	+0.0
2,705,879	-		LRK54_RS12155	0.68	-0.0
2,705,879	-		LRK54_RS12155	0.68	-0.2
2,705,879	-		LRK54_RS12155	0.68	-0.0
2,705,879	-		LRK54_RS12155	0.68	-0.3
2,705,879	-		LRK54_RS12155	0.68	+0.2
2,705,879	-		LRK54_RS12155	0.68	-0.4
2,705,879	-		LRK54_RS12155	0.68	-0.0
2,706,213	+				-0.3
2,706,213	+				-0.1
2,706,213	+				+0.1
2,706,214	-				+0.5
2,706,214	-				-1.3
2,706,246	+				-0.3
2,706,246	+				+0.7
2,706,246	+				-0.2
2,706,247	-				-0.5
2,706,247	-				-1.3
2,706,247	-				+0.3
2,706,247	-				-0.6
2,706,247	-				+0.0
2,706,247	-				+0.0
2,706,354	-				+1.1
2,706,354	-				+2.0
2,706,592	+		LRK54_RS12165	0.26	+0.8
2,706,593	+		LRK54_RS12165	0.26	+1.4
2,706,593	+		LRK54_RS12165	0.26	+1.1
2,706,593	+		LRK54_RS12165	0.26	+2.1
2,706,593	+		LRK54_RS12165	0.26	+1.7
2,706,593	+		LRK54_RS12165	0.26	+1.2
2,706,593	+		LRK54_RS12165	0.26	+1.4
2,706,593	+		LRK54_RS12165	0.26	+1.3
2,706,593	+		LRK54_RS12165	0.26	+1.5
2,706,594	-		LRK54_RS12165	0.26	+1.4
2,706,594	-		LRK54_RS12165	0.26	+1.6
2,706,594	-		LRK54_RS12165	0.26	+1.9
2,706,594	-		LRK54_RS12165	0.26	+1.4
2,706,594	-		LRK54_RS12165	0.26	+1.7
2,706,594	-		LRK54_RS12165	0.26	+2.0
2,706,594	-		LRK54_RS12165	0.26	+1.8
2,706,594	-		LRK54_RS12165	0.26	+0.3
2,706,788	+		LRK54_RS12165	0.41	+1.2
2,706,788	+		LRK54_RS12165	0.41	+1.0
2,706,788	+		LRK54_RS12165	0.41	+1.5
2,706,788	+		LRK54_RS12165	0.41	+1.9
2,706,788	+		LRK54_RS12165	0.41	+1.6
2,706,788	+		LRK54_RS12165	0.41	+1.3
2,706,788	+		LRK54_RS12165	0.41	+2.1
2,706,788	+		LRK54_RS12165	0.41	+1.2
2,706,789	-		LRK54_RS12165	0.41	+1.4
2,706,789	-		LRK54_RS12165	0.41	+1.3
2,706,789	-		LRK54_RS12165	0.41	+1.3
2,706,789	-		LRK54_RS12165	0.41	+1.3
2,706,789	-		LRK54_RS12165	0.41	+1.6
2,706,789	-		LRK54_RS12165	0.41	+1.3
2,706,812	+		LRK54_RS12165	0.43	+1.3
2,706,813	-		LRK54_RS12165	0.43	+1.4
2,706,854	+		LRK54_RS12165	0.46	+1.5
2,707,022	+		LRK54_RS12165	0.59	+2.3
2,707,022	+		LRK54_RS12165	0.59	+1.6
2,707,022	+		LRK54_RS12165	0.59	+1.7
2,707,022	+		LRK54_RS12165	0.59	+1.3
2,707,022	+		LRK54_RS12165	0.59	+1.6
2,707,022	+		LRK54_RS12165	0.59	+1.6
2,707,022	+		LRK54_RS12165	0.59	+2.2
2,707,022	+		LRK54_RS12165	0.59	+1.4
2,707,022	+		LRK54_RS12165	0.59	+1.3
2,707,022	+		LRK54_RS12165	0.59	+1.6
2,707,022	+		LRK54_RS12165	0.59	+1.6
2,707,022	+		LRK54_RS12165	0.59	+1.7
2,707,022	+		LRK54_RS12165	0.59	+1.5
2,707,022	+		LRK54_RS12165	0.59	+1.5
2,707,022	+		LRK54_RS12165	0.59	+1.5
2,707,022	+		LRK54_RS12165	0.59	+1.7
2,707,023	-		LRK54_RS12165	0.59	+1.6
2,707,023	-		LRK54_RS12165	0.59	+0.5
2,707,023	-		LRK54_RS12165	0.59	+1.4
2,707,023	-		LRK54_RS12165	0.59	+1.9
2,707,023	-		LRK54_RS12165	0.59	+1.6
2,707,023	-		LRK54_RS12165	0.59	+1.3
2,707,023	-		LRK54_RS12165	0.59	-0.3
2,707,023	-		LRK54_RS12165	0.59	+1.4
2,707,151	+		LRK54_RS12165	0.69	+1.3
2,707,151	+		LRK54_RS12165	0.69	+1.8
2,707,151	+		LRK54_RS12165	0.69	+1.6
2,707,151	+		LRK54_RS12165	0.69	+1.6
2,707,151	+		LRK54_RS12165	0.69	+1.2
2,707,152	-		LRK54_RS12165	0.69	+1.3
2,707,152	-		LRK54_RS12165	0.69	+0.9
2,707,152	-		LRK54_RS12165	0.69	+1.4
2,707,152	-		LRK54_RS12165	0.69	+1.7
2,707,152	-		LRK54_RS12165	0.69	+1.3
2,707,152	-		LRK54_RS12165	0.69	+0.7