Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS19310 and HSERO_RS19315 are separated by 132 nucleotides HSERO_RS19315 and HSERO_RS19320 are separated by 114 nucleotides HSERO_RS19320 and HSERO_RS19325 are separated by 229 nucleotides
HSERO_RS19310: HSERO_RS19310 - membrane protein, at 4,429,292 to 4,429,642
_RS19310
HSERO_RS19315: HSERO_RS19315 - hypothetical protein, at 4,429,775 to 4,430,494
_RS19315
HSERO_RS19320: HSERO_RS19320 - hypothetical protein, at 4,430,609 to 4,431,397
_RS19320
HSERO_RS19325: HSERO_RS19325 - LysR family transcriptional regulator, at 4,431,627 to 4,432,601
_RS19325
Position (kb) 4430
4431
4432 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4429.641 kb on + strand at 4429.791 kb on - strand at 4429.974 kb on + strand, within HSERO_RS19315 at 4430.140 kb on + strand, within HSERO_RS19315 at 4430.190 kb on - strand, within HSERO_RS19315 at 4430.190 kb on - strand, within HSERO_RS19315 at 4430.309 kb on - strand, within HSERO_RS19315 at 4430.524 kb on - strand at 4430.532 kb on - strand at 4430.907 kb on - strand, within HSERO_RS19320 at 4430.924 kb on + strand, within HSERO_RS19320 at 4430.958 kb on - strand, within HSERO_RS19320 at 4430.977 kb on - strand, within HSERO_RS19320 at 4431.098 kb on - strand, within HSERO_RS19320 at 4431.135 kb on - strand, within HSERO_RS19320 at 4431.147 kb on + strand, within HSERO_RS19320 at 4431.237 kb on - strand, within HSERO_RS19320 at 4431.294 kb on - strand, within HSERO_RS19320 at 4431.295 kb on - strand, within HSERO_RS19320 at 4431.426 kb on + strand at 4431.442 kb on + strand at 4431.584 kb on + strand at 4431.901 kb on + strand, within HSERO_RS19325 at 4431.979 kb on + strand, within HSERO_RS19325 at 4432.092 kb on - strand, within HSERO_RS19325 at 4432.096 kb on + strand, within HSERO_RS19325 at 4432.263 kb on - strand, within HSERO_RS19325 at 4432.281 kb on - strand, within HSERO_RS19325 at 4432.376 kb on - strand, within HSERO_RS19325
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 4,429,641 + +2.1 4,429,791 - -0.7 4,429,974 + HSERO_RS19315 0.28 -1.9 4,430,140 + HSERO_RS19315 0.51 -0.2 4,430,190 - HSERO_RS19315 0.58 -0.8 4,430,190 - HSERO_RS19315 0.58 -0.3 4,430,309 - HSERO_RS19315 0.74 +0.3 4,430,524 - -0.2 4,430,532 - -1.3 4,430,907 - HSERO_RS19320 0.38 +1.1 4,430,924 + HSERO_RS19320 0.40 -0.5 4,430,958 - HSERO_RS19320 0.44 -0.5 4,430,977 - HSERO_RS19320 0.47 -2.4 4,431,098 - HSERO_RS19320 0.62 -0.3 4,431,135 - HSERO_RS19320 0.67 -0.0 4,431,147 + HSERO_RS19320 0.68 +0.6 4,431,237 - HSERO_RS19320 0.80 +1.6 4,431,294 - HSERO_RS19320 0.87 +0.1 4,431,295 - HSERO_RS19320 0.87 +3.0 4,431,426 + -0.3 4,431,442 + -0.3 4,431,584 + +0.7 4,431,901 + HSERO_RS19325 0.28 +2.0 4,431,979 + HSERO_RS19325 0.36 +1.7 4,432,092 - HSERO_RS19325 0.48 +1.4 4,432,096 + HSERO_RS19325 0.48 -0.1 4,432,263 - HSERO_RS19325 0.65 +0.5 4,432,281 - HSERO_RS19325 0.67 +1.3 4,432,376 - HSERO_RS19325 0.77 +1.2
Or see this region's nucleotide sequence