Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03330 and HSERO_RS03335 are separated by 162 nucleotides HSERO_RS03335 and HSERO_RS03340 overlap by 4 nucleotides HSERO_RS03340 and HSERO_RS03345 are separated by 122 nucleotides
HSERO_RS03330: HSERO_RS03330 - branched-chain amino acid aminotransferase, at 730,868 to 731,788
_RS03330
HSERO_RS03335: HSERO_RS03335 - branched-chain amino acid ABC transporter permease, at 731,951 to 732,736
_RS03335
HSERO_RS03340: HSERO_RS03340 - branched-chain amino acid transporter, at 732,733 to 733,056
_RS03340
HSERO_RS03345: HSERO_RS03345 - phosphoglycerate kinase, at 733,179 to 734,369
_RS03345
Position (kb) 731
732
733 Strain fitness (log2 ratio) -2
-1
0
1
2 at 731.160 kb on + strand, within HSERO_RS03330 at 731.168 kb on - strand, within HSERO_RS03330 at 731.266 kb on - strand, within HSERO_RS03330 at 731.478 kb on + strand, within HSERO_RS03330 at 731.688 kb on + strand, within HSERO_RS03330 at 731.688 kb on - strand, within HSERO_RS03330 at 731.696 kb on - strand, within HSERO_RS03330 at 731.713 kb on - strand at 731.784 kb on - strand at 731.786 kb on - strand at 731.823 kb on - strand at 731.823 kb on - strand at 731.933 kb on - strand at 731.959 kb on + strand at 731.979 kb on + strand at 732.067 kb on - strand, within HSERO_RS03335 at 732.082 kb on + strand, within HSERO_RS03335 at 732.082 kb on + strand, within HSERO_RS03335 at 732.082 kb on + strand, within HSERO_RS03335 at 732.090 kb on - strand, within HSERO_RS03335 at 732.090 kb on - strand, within HSERO_RS03335 at 732.090 kb on - strand, within HSERO_RS03335 at 732.107 kb on + strand, within HSERO_RS03335 at 732.163 kb on - strand, within HSERO_RS03335 at 732.208 kb on + strand, within HSERO_RS03335 at 732.299 kb on + strand, within HSERO_RS03335 at 732.324 kb on + strand, within HSERO_RS03335 at 732.349 kb on + strand, within HSERO_RS03335 at 732.554 kb on + strand, within HSERO_RS03335 at 732.580 kb on + strand, within HSERO_RS03335 at 732.580 kb on + strand, within HSERO_RS03335 at 732.593 kb on - strand, within HSERO_RS03335 at 732.593 kb on - strand, within HSERO_RS03335 at 732.636 kb on - strand, within HSERO_RS03335 at 732.683 kb on - strand at 732.776 kb on + strand, within HSERO_RS03340 at 732.789 kb on - strand, within HSERO_RS03340 at 732.863 kb on - strand, within HSERO_RS03340 at 732.893 kb on + strand, within HSERO_RS03340 at 732.911 kb on - strand, within HSERO_RS03340 at 732.934 kb on - strand, within HSERO_RS03340 at 733.036 kb on + strand at 733.124 kb on + strand at 733.124 kb on + strand at 733.124 kb on + strand at 733.132 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 731,160 + HSERO_RS03330 0.32 -0.2 731,168 - HSERO_RS03330 0.33 +0.6 731,266 - HSERO_RS03330 0.43 +1.4 731,478 + HSERO_RS03330 0.66 -0.7 731,688 + HSERO_RS03330 0.89 -0.1 731,688 - HSERO_RS03330 0.89 +1.1 731,696 - HSERO_RS03330 0.90 -0.6 731,713 - +0.6 731,784 - +0.4 731,786 - -0.1 731,823 - +0.4 731,823 - +0.1 731,933 - +0.9 731,959 + -1.4 731,979 + -1.0 732,067 - HSERO_RS03335 0.15 +0.1 732,082 + HSERO_RS03335 0.17 +1.2 732,082 + HSERO_RS03335 0.17 +0.1 732,082 + HSERO_RS03335 0.17 -2.5 732,090 - HSERO_RS03335 0.18 -0.3 732,090 - HSERO_RS03335 0.18 +0.8 732,090 - HSERO_RS03335 0.18 -0.1 732,107 + HSERO_RS03335 0.20 -0.8 732,163 - HSERO_RS03335 0.27 -1.2 732,208 + HSERO_RS03335 0.33 +0.3 732,299 + HSERO_RS03335 0.44 -0.4 732,324 + HSERO_RS03335 0.47 -0.8 732,349 + HSERO_RS03335 0.51 +0.2 732,554 + HSERO_RS03335 0.77 +0.4 732,580 + HSERO_RS03335 0.80 -1.8 732,580 + HSERO_RS03335 0.80 +1.2 732,593 - HSERO_RS03335 0.82 -0.1 732,593 - HSERO_RS03335 0.82 +0.7 732,636 - HSERO_RS03335 0.87 -0.1 732,683 - +2.2 732,776 + HSERO_RS03340 0.13 +1.6 732,789 - HSERO_RS03340 0.17 -0.7 732,863 - HSERO_RS03340 0.40 +0.6 732,893 + HSERO_RS03340 0.49 -0.2 732,911 - HSERO_RS03340 0.55 -2.2 732,934 - HSERO_RS03340 0.62 -0.0 733,036 + -0.5 733,124 + +0.1 733,124 + -1.2 733,124 + +0.6 733,132 - +1.2
Or see this region's nucleotide sequence