Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS03230

Experiment: Mannan from Saccharomyces cerevisiae 5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS03235 and HMPREF1058_RS03230 are separated by 3 nucleotidesHMPREF1058_RS03230 and HMPREF1058_RS03225 overlap by 7 nucleotidesHMPREF1058_RS03225 and HMPREF1058_RS03220 are separated by 12 nucleotides HMPREF1058_RS03235: HMPREF1058_RS03235 - ABC transporter substrate-binding protein, at 323,700 to 325,034 _RS03235 HMPREF1058_RS03230: HMPREF1058_RS03230 - ABC transporter permease, at 325,038 to 325,829 _RS03230 HMPREF1058_RS03225: HMPREF1058_RS03225 - ABC transporter permease, at 325,823 to 326,620 _RS03225 HMPREF1058_RS03220: HMPREF1058_RS03220 - polyamine ABC transporter ATP-binding protein, at 326,633 to 328,027 _RS03220 Position (kb) 325 326Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 324.085 kb on - strand, within HMPREF1058_RS03235at 324.110 kb on - strand, within HMPREF1058_RS03235at 324.117 kb on - strand, within HMPREF1058_RS03235at 324.143 kb on + strand, within HMPREF1058_RS03235at 324.148 kb on + strand, within HMPREF1058_RS03235at 324.149 kb on - strand, within HMPREF1058_RS03235at 324.149 kb on - strand, within HMPREF1058_RS03235at 324.182 kb on + strand, within HMPREF1058_RS03235at 324.183 kb on - strand, within HMPREF1058_RS03235at 324.293 kb on + strand, within HMPREF1058_RS03235at 324.470 kb on - strand, within HMPREF1058_RS03235at 324.582 kb on - strand, within HMPREF1058_RS03235at 324.599 kb on + strand, within HMPREF1058_RS03235at 324.600 kb on - strand, within HMPREF1058_RS03235at 324.667 kb on + strand, within HMPREF1058_RS03235at 324.688 kb on + strand, within HMPREF1058_RS03235at 324.730 kb on - strand, within HMPREF1058_RS03235at 324.778 kb on - strand, within HMPREF1058_RS03235at 324.857 kb on + strand, within HMPREF1058_RS03235at 324.880 kb on + strand, within HMPREF1058_RS03235at 324.932 kb on + strandat 324.937 kb on - strandat 324.970 kb on + strandat 325.020 kb on - strandat 325.104 kb on + strandat 325.105 kb on - strandat 325.166 kb on + strand, within HMPREF1058_RS03230at 325.166 kb on + strand, within HMPREF1058_RS03230at 325.168 kb on + strand, within HMPREF1058_RS03230at 325.205 kb on + strand, within HMPREF1058_RS03230at 325.210 kb on - strand, within HMPREF1058_RS03230at 325.396 kb on + strand, within HMPREF1058_RS03230at 325.396 kb on + strand, within HMPREF1058_RS03230at 325.397 kb on - strand, within HMPREF1058_RS03230at 325.397 kb on - strand, within HMPREF1058_RS03230at 325.397 kb on - strand, within HMPREF1058_RS03230at 325.403 kb on + strand, within HMPREF1058_RS03230at 325.416 kb on - strand, within HMPREF1058_RS03230at 325.436 kb on + strand, within HMPREF1058_RS03230at 325.438 kb on + strand, within HMPREF1058_RS03230at 325.439 kb on - strand, within HMPREF1058_RS03230at 325.439 kb on - strand, within HMPREF1058_RS03230at 325.439 kb on - strand, within HMPREF1058_RS03230at 325.482 kb on + strand, within HMPREF1058_RS03230at 325.483 kb on - strand, within HMPREF1058_RS03230at 325.484 kb on + strand, within HMPREF1058_RS03230at 325.485 kb on - strand, within HMPREF1058_RS03230at 325.493 kb on + strand, within HMPREF1058_RS03230at 325.635 kb on - strand, within HMPREF1058_RS03230at 325.680 kb on + strand, within HMPREF1058_RS03230at 325.774 kb on + strandat 325.775 kb on - strandat 325.933 kb on + strand, within HMPREF1058_RS03225at 325.936 kb on + strand, within HMPREF1058_RS03225at 325.937 kb on - strand, within HMPREF1058_RS03225at 325.939 kb on + strand, within HMPREF1058_RS03225at 325.975 kb on + strand, within HMPREF1058_RS03225at 325.982 kb on - strand, within HMPREF1058_RS03225at 326.024 kb on - strand, within HMPREF1058_RS03225at 326.030 kb on - strand, within HMPREF1058_RS03225at 326.034 kb on - strand, within HMPREF1058_RS03225at 326.034 kb on - strand, within HMPREF1058_RS03225at 326.034 kb on - strand, within HMPREF1058_RS03225at 326.042 kb on + strand, within HMPREF1058_RS03225at 326.042 kb on + strand, within HMPREF1058_RS03225at 326.043 kb on - strand, within HMPREF1058_RS03225at 326.136 kb on + strand, within HMPREF1058_RS03225at 326.136 kb on + strand, within HMPREF1058_RS03225at 326.201 kb on + strand, within HMPREF1058_RS03225at 326.201 kb on + strand, within HMPREF1058_RS03225at 326.201 kb on + strand, within HMPREF1058_RS03225at 326.279 kb on + strand, within HMPREF1058_RS03225at 326.335 kb on - strand, within HMPREF1058_RS03225at 326.381 kb on + strand, within HMPREF1058_RS03225at 326.386 kb on + strand, within HMPREF1058_RS03225at 326.390 kb on + strand, within HMPREF1058_RS03225at 326.391 kb on - strand, within HMPREF1058_RS03225at 326.420 kb on - strand, within HMPREF1058_RS03225at 326.504 kb on - strand, within HMPREF1058_RS03225at 326.504 kb on - strand, within HMPREF1058_RS03225at 326.547 kb on - strandat 326.634 kb on + strandat 326.684 kb on - strandat 326.687 kb on + strandat 326.687 kb on + strandat 326.688 kb on - strandat 326.688 kb on - strandat 326.709 kb on - strandat 326.779 kb on + strand, within HMPREF1058_RS03220at 326.780 kb on - strand, within HMPREF1058_RS03220at 326.781 kb on + strand, within HMPREF1058_RS03220at 326.781 kb on + strand, within HMPREF1058_RS03220at 326.784 kb on - strand, within HMPREF1058_RS03220at 326.795 kb on + strand, within HMPREF1058_RS03220

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Per-strain Table

Position Strand Gene LocusTag Fraction Mannan from Saccharomyces cerevisiae 5 mg/ml (C)
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324,085 - HMPREF1058_RS03235 0.29 +1.0
324,110 - HMPREF1058_RS03235 0.31 +0.7
324,117 - HMPREF1058_RS03235 0.31 +0.6
324,143 + HMPREF1058_RS03235 0.33 +1.0
324,148 + HMPREF1058_RS03235 0.34 +0.2
324,149 - HMPREF1058_RS03235 0.34 +0.7
324,149 - HMPREF1058_RS03235 0.34 +0.8
324,182 + HMPREF1058_RS03235 0.36 -0.1
324,183 - HMPREF1058_RS03235 0.36 +0.9
324,293 + HMPREF1058_RS03235 0.44 +0.6
324,470 - HMPREF1058_RS03235 0.58 -0.1
324,582 - HMPREF1058_RS03235 0.66 -0.1
324,599 + HMPREF1058_RS03235 0.67 +0.3
324,600 - HMPREF1058_RS03235 0.67 +0.7
324,667 + HMPREF1058_RS03235 0.72 +0.5
324,688 + HMPREF1058_RS03235 0.74 +0.6
324,730 - HMPREF1058_RS03235 0.77 +0.5
324,778 - HMPREF1058_RS03235 0.81 +0.9
324,857 + HMPREF1058_RS03235 0.87 -1.2
324,880 + HMPREF1058_RS03235 0.88 +0.2
324,932 + -0.2
324,937 - +1.2
324,970 + +0.1
325,020 - +1.0
325,104 + +0.6
325,105 - -0.4
325,166 + HMPREF1058_RS03230 0.16 -0.2
325,166 + HMPREF1058_RS03230 0.16 +1.9
325,168 + HMPREF1058_RS03230 0.16 +4.1
325,205 + HMPREF1058_RS03230 0.21 +0.9
325,210 - HMPREF1058_RS03230 0.22 -1.0
325,396 + HMPREF1058_RS03230 0.45 +4.1
325,396 + HMPREF1058_RS03230 0.45 +1.1
325,397 - HMPREF1058_RS03230 0.45 +1.8
325,397 - HMPREF1058_RS03230 0.45 +0.2
325,397 - HMPREF1058_RS03230 0.45 +1.3
325,403 + HMPREF1058_RS03230 0.46 +2.1
325,416 - HMPREF1058_RS03230 0.48 +0.5
325,436 + HMPREF1058_RS03230 0.50 +0.8
325,438 + HMPREF1058_RS03230 0.51 +0.9
325,439 - HMPREF1058_RS03230 0.51 -1.2
325,439 - HMPREF1058_RS03230 0.51 +1.4
325,439 - HMPREF1058_RS03230 0.51 -0.1
325,482 + HMPREF1058_RS03230 0.56 -1.3
325,483 - HMPREF1058_RS03230 0.56 +0.5
325,484 + HMPREF1058_RS03230 0.56 +0.2
325,485 - HMPREF1058_RS03230 0.56 +0.8
325,493 + HMPREF1058_RS03230 0.57 +0.9
325,635 - HMPREF1058_RS03230 0.75 +0.7
325,680 + HMPREF1058_RS03230 0.81 -0.3
325,774 + -0.2
325,775 - +0.4
325,933 + HMPREF1058_RS03225 0.14 +0.7
325,936 + HMPREF1058_RS03225 0.14 +2.9
325,937 - HMPREF1058_RS03225 0.14 +0.2
325,939 + HMPREF1058_RS03225 0.15 +1.1
325,975 + HMPREF1058_RS03225 0.19 +0.0
325,982 - HMPREF1058_RS03225 0.20 +0.6
326,024 - HMPREF1058_RS03225 0.25 +0.4
326,030 - HMPREF1058_RS03225 0.26 -0.2
326,034 - HMPREF1058_RS03225 0.26 +1.6
326,034 - HMPREF1058_RS03225 0.26 +1.8
326,034 - HMPREF1058_RS03225 0.26 +0.8
326,042 + HMPREF1058_RS03225 0.27 -1.3
326,042 + HMPREF1058_RS03225 0.27 +1.7
326,043 - HMPREF1058_RS03225 0.28 -0.8
326,136 + HMPREF1058_RS03225 0.39 +0.8
326,136 + HMPREF1058_RS03225 0.39 +0.9
326,201 + HMPREF1058_RS03225 0.47 +0.9
326,201 + HMPREF1058_RS03225 0.47 -0.1
326,201 + HMPREF1058_RS03225 0.47 +1.3
326,279 + HMPREF1058_RS03225 0.57 -0.8
326,335 - HMPREF1058_RS03225 0.64 -0.7
326,381 + HMPREF1058_RS03225 0.70 +0.6
326,386 + HMPREF1058_RS03225 0.71 +0.2
326,390 + HMPREF1058_RS03225 0.71 +0.3
326,391 - HMPREF1058_RS03225 0.71 +0.6
326,420 - HMPREF1058_RS03225 0.75 -0.0
326,504 - HMPREF1058_RS03225 0.85 +0.3
326,504 - HMPREF1058_RS03225 0.85 -2.7
326,547 - +0.2
326,634 + -0.7
326,684 - +0.0
326,687 + +0.9
326,687 + -0.9
326,688 - -0.7
326,688 - +0.6
326,709 - +0.9
326,779 + HMPREF1058_RS03220 0.10 +0.2
326,780 - HMPREF1058_RS03220 0.11 -0.1
326,781 + HMPREF1058_RS03220 0.11 +1.4
326,781 + HMPREF1058_RS03220 0.11 +1.3
326,784 - HMPREF1058_RS03220 0.11 -1.0
326,795 + HMPREF1058_RS03220 0.12 +0.9

Or see this region's nucleotide sequence