Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3887

Experiment: acetate 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_3885 and Ga0059261_3886 are separated by 9 nucleotidesGa0059261_3886 and Ga0059261_3887 are separated by 71 nucleotidesGa0059261_3887 and Ga0059261_3888 overlap by 50 nucleotides Ga0059261_3885: Ga0059261_3885 - K+-transporting ATPase, C subunit, at 3,993,832 to 3,994,416 _3885 Ga0059261_3886: Ga0059261_3886 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 3,994,426 to 3,995,121 _3886 Ga0059261_3887: Ga0059261_3887 - Glycosyl hydrolases family 16, at 3,995,193 to 3,996,044 _3887 Ga0059261_3888: Ga0059261_3888 - Major Facilitator Superfamily, at 3,995,995 to 3,997,191 _3888 Position (kb) 3995 3996 3997Strain fitness (log2 ratio) -2 -1 0 1 2at 3994.415 kb on - strandat 3994.726 kb on + strand, within Ga0059261_3886at 3994.726 kb on + strand, within Ga0059261_3886at 3994.727 kb on - strand, within Ga0059261_3886at 3994.727 kb on - strand, within Ga0059261_3886at 3994.727 kb on - strand, within Ga0059261_3886at 3994.903 kb on + strand, within Ga0059261_3886at 3994.903 kb on + strand, within Ga0059261_3886at 3994.903 kb on + strand, within Ga0059261_3886at 3994.904 kb on - strand, within Ga0059261_3886at 3994.904 kb on - strand, within Ga0059261_3886at 3994.904 kb on - strand, within Ga0059261_3886at 3994.904 kb on - strand, within Ga0059261_3886at 3994.904 kb on - strand, within Ga0059261_3886at 3994.904 kb on - strand, within Ga0059261_3886at 3995.005 kb on + strand, within Ga0059261_3886at 3995.005 kb on + strand, within Ga0059261_3886at 3995.005 kb on + strand, within Ga0059261_3886at 3995.005 kb on + strand, within Ga0059261_3886at 3995.006 kb on - strand, within Ga0059261_3886at 3995.006 kb on - strand, within Ga0059261_3886at 3995.006 kb on - strand, within Ga0059261_3886at 3995.013 kb on + strand, within Ga0059261_3886at 3995.013 kb on + strand, within Ga0059261_3886at 3995.014 kb on - strand, within Ga0059261_3886at 3995.327 kb on + strand, within Ga0059261_3887at 3995.367 kb on + strand, within Ga0059261_3887at 3995.368 kb on - strand, within Ga0059261_3887at 3995.372 kb on + strand, within Ga0059261_3887at 3995.372 kb on + strand, within Ga0059261_3887at 3995.373 kb on - strandat 3995.385 kb on + strand, within Ga0059261_3887at 3995.385 kb on + strand, within Ga0059261_3887at 3995.386 kb on - strand, within Ga0059261_3887at 3995.386 kb on - strand, within Ga0059261_3887at 3995.386 kb on - strand, within Ga0059261_3887at 3995.386 kb on - strand, within Ga0059261_3887at 3995.386 kb on - strand, within Ga0059261_3887at 3995.389 kb on - strandat 3995.389 kb on - strand, within Ga0059261_3887at 3995.493 kb on + strand, within Ga0059261_3887at 3995.493 kb on + strand, within Ga0059261_3887at 3995.493 kb on + strand, within Ga0059261_3887at 3995.494 kb on - strand, within Ga0059261_3887at 3995.494 kb on - strand, within Ga0059261_3887at 3995.526 kb on + strand, within Ga0059261_3887at 3995.533 kb on - strand, within Ga0059261_3887at 3995.541 kb on + strand, within Ga0059261_3887at 3995.541 kb on + strand, within Ga0059261_3887at 3995.541 kb on + strand, within Ga0059261_3887at 3995.541 kb on + strand, within Ga0059261_3887at 3995.542 kb on - strand, within Ga0059261_3887at 3995.703 kb on + strand, within Ga0059261_3887at 3995.703 kb on + strand, within Ga0059261_3887at 3995.704 kb on - strand, within Ga0059261_3887at 3995.704 kb on - strand, within Ga0059261_3887at 3995.704 kb on - strand, within Ga0059261_3887at 3995.704 kb on - strand, within Ga0059261_3887at 3995.704 kb on - strand, within Ga0059261_3887at 3995.756 kb on + strand, within Ga0059261_3887at 3995.756 kb on + strand, within Ga0059261_3887at 3995.756 kb on + strand, within Ga0059261_3887at 3995.756 kb on + strand, within Ga0059261_3887at 3995.756 kb on + strand, within Ga0059261_3887at 3995.756 kb on + strand, within Ga0059261_3887at 3995.757 kb on - strand, within Ga0059261_3887at 3995.757 kb on - strand, within Ga0059261_3887at 3995.757 kb on - strand, within Ga0059261_3887at 3995.763 kb on + strand, within Ga0059261_3887at 3995.763 kb on + strand, within Ga0059261_3887at 3995.763 kb on + strandat 3995.764 kb on - strand, within Ga0059261_3887at 3995.772 kb on + strand, within Ga0059261_3887at 3995.772 kb on + strand, within Ga0059261_3887at 3995.772 kb on + strand, within Ga0059261_3887at 3995.772 kb on + strand, within Ga0059261_3887at 3995.772 kb on + strand, within Ga0059261_3887at 3995.772 kb on + strand, within Ga0059261_3887at 3995.772 kb on + strand, within Ga0059261_3887at 3995.772 kb on + strand, within Ga0059261_3887at 3995.772 kb on + strand, within Ga0059261_3887at 3995.772 kb on + strand, within Ga0059261_3887at 3995.772 kb on + strand, within Ga0059261_3887at 3995.773 kb on - strand, within Ga0059261_3887at 3995.773 kb on - strand, within Ga0059261_3887at 3995.773 kb on - strand, within Ga0059261_3887at 3995.773 kb on - strand, within Ga0059261_3887at 3995.773 kb on - strand, within Ga0059261_3887at 3995.773 kb on - strand, within Ga0059261_3887at 3995.773 kb on - strand, within Ga0059261_3887at 3995.773 kb on - strand, within Ga0059261_3887at 3995.773 kb on - strand, within Ga0059261_3887at 3995.773 kb on - strand, within Ga0059261_3887at 3995.773 kb on - strand, within Ga0059261_3887at 3995.828 kb on + strandat 3995.828 kb on + strand, within Ga0059261_3887at 3995.828 kb on + strand, within Ga0059261_3887at 3995.828 kb on + strand, within Ga0059261_3887at 3995.828 kb on + strand, within Ga0059261_3887at 3995.828 kb on + strand, within Ga0059261_3887at 3995.828 kb on + strand, within Ga0059261_3887at 3995.828 kb on + strand, within Ga0059261_3887at 3995.829 kb on - strand, within Ga0059261_3887at 3995.829 kb on - strand, within Ga0059261_3887at 3995.829 kb on - strand, within Ga0059261_3887at 3995.829 kb on - strand, within Ga0059261_3887at 3995.829 kb on - strand, within Ga0059261_3887at 3995.829 kb on - strand, within Ga0059261_3887at 3995.829 kb on - strand, within Ga0059261_3887at 3995.829 kb on - strand, within Ga0059261_3887at 3995.829 kb on - strand, within Ga0059261_3887at 3995.829 kb on - strand, within Ga0059261_3887at 3995.886 kb on + strand, within Ga0059261_3887at 3995.886 kb on + strand, within Ga0059261_3887at 3995.887 kb on - strand, within Ga0059261_3887at 3995.949 kb on - strand, within Ga0059261_3887at 3995.979 kb on + strandat 3995.979 kb on + strandat 3995.979 kb on + strandat 3995.980 kb on - strandat 3995.980 kb on - strandat 3995.980 kb on - strandat 3995.980 kb on - strandat 3995.980 kb on - strandat 3995.980 kb on - strandat 3995.980 kb on - strandat 3995.989 kb on - strandat 3996.042 kb on + strandat 3996.042 kb on + strandat 3996.042 kb on + strandat 3996.043 kb on - strandat 3996.043 kb on - strandat 3996.243 kb on - strand, within Ga0059261_3888at 3996.267 kb on + strand, within Ga0059261_3888at 3996.268 kb on - strand, within Ga0059261_3888at 3996.268 kb on - strandat 3996.405 kb on - strand, within Ga0059261_3888at 3996.405 kb on - strandat 3996.479 kb on + strand, within Ga0059261_3888at 3996.479 kb on + strand, within Ga0059261_3888at 3996.479 kb on + strand, within Ga0059261_3888at 3996.479 kb on + strand, within Ga0059261_3888at 3996.480 kb on - strand, within Ga0059261_3888at 3996.480 kb on - strand, within Ga0059261_3888at 3996.480 kb on - strand, within Ga0059261_3888at 3996.480 kb on - strand, within Ga0059261_3888at 3996.480 kb on - strand, within Ga0059261_3888at 3996.482 kb on + strand, within Ga0059261_3888at 3996.482 kb on + strandat 3996.483 kb on - strand, within Ga0059261_3888at 3996.483 kb on - strand, within Ga0059261_3888at 3996.483 kb on - strand, within Ga0059261_3888at 3996.483 kb on - strand, within Ga0059261_3888at 3996.491 kb on + strand, within Ga0059261_3888at 3996.491 kb on + strand, within Ga0059261_3888at 3996.491 kb on + strand, within Ga0059261_3888at 3996.491 kb on + strandat 3996.491 kb on + strand, within Ga0059261_3888at 3996.492 kb on - strand, within Ga0059261_3888at 3996.492 kb on - strand, within Ga0059261_3888at 3996.492 kb on - strand, within Ga0059261_3888

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate 10 mM
remove
3,994,415 - -1.1
3,994,726 + Ga0059261_3886 0.43 -0.5
3,994,726 + Ga0059261_3886 0.43 +0.7
3,994,727 - Ga0059261_3886 0.43 +1.3
3,994,727 - Ga0059261_3886 0.43 -0.3
3,994,727 - Ga0059261_3886 0.43 +0.0
3,994,903 + Ga0059261_3886 0.69 -0.1
3,994,903 + Ga0059261_3886 0.69 +0.0
3,994,903 + Ga0059261_3886 0.69 -0.3
3,994,904 - Ga0059261_3886 0.69 +0.2
3,994,904 - Ga0059261_3886 0.69 -0.5
3,994,904 - Ga0059261_3886 0.69 -0.4
3,994,904 - Ga0059261_3886 0.69 +1.4
3,994,904 - Ga0059261_3886 0.69 +0.3
3,994,904 - Ga0059261_3886 0.69 -0.6
3,995,005 + Ga0059261_3886 0.83 +0.1
3,995,005 + Ga0059261_3886 0.83 +0.1
3,995,005 + Ga0059261_3886 0.83 -1.2
3,995,005 + Ga0059261_3886 0.83 -2.0
3,995,006 - Ga0059261_3886 0.83 -0.3
3,995,006 - Ga0059261_3886 0.83 +0.7
3,995,006 - Ga0059261_3886 0.83 -0.1
3,995,013 + Ga0059261_3886 0.84 -0.1
3,995,013 + Ga0059261_3886 0.84 +0.4
3,995,014 - Ga0059261_3886 0.84 +0.1
3,995,327 + Ga0059261_3887 0.16 -0.1
3,995,367 + Ga0059261_3887 0.20 -0.4
3,995,368 - Ga0059261_3887 0.21 -0.7
3,995,372 + Ga0059261_3887 0.21 -0.4
3,995,372 + Ga0059261_3887 0.21 +0.2
3,995,373 - -1.1
3,995,385 + Ga0059261_3887 0.23 +0.4
3,995,385 + Ga0059261_3887 0.23 +0.7
3,995,386 - Ga0059261_3887 0.23 -0.1
3,995,386 - Ga0059261_3887 0.23 +0.0
3,995,386 - Ga0059261_3887 0.23 -0.8
3,995,386 - Ga0059261_3887 0.23 -0.1
3,995,386 - Ga0059261_3887 0.23 +0.5
3,995,389 - +0.9
3,995,389 - Ga0059261_3887 0.23 +0.0
3,995,493 + Ga0059261_3887 0.35 +0.0
3,995,493 + Ga0059261_3887 0.35 -0.5
3,995,493 + Ga0059261_3887 0.35 +0.6
3,995,494 - Ga0059261_3887 0.35 -0.3
3,995,494 - Ga0059261_3887 0.35 -0.2
3,995,526 + Ga0059261_3887 0.39 +0.3
3,995,533 - Ga0059261_3887 0.40 -0.3
3,995,541 + Ga0059261_3887 0.41 -0.3
3,995,541 + Ga0059261_3887 0.41 -0.6
3,995,541 + Ga0059261_3887 0.41 -0.2
3,995,541 + Ga0059261_3887 0.41 -0.9
3,995,542 - Ga0059261_3887 0.41 -0.8
3,995,703 + Ga0059261_3887 0.60 -0.2
3,995,703 + Ga0059261_3887 0.60 -0.3
3,995,704 - Ga0059261_3887 0.60 -0.2
3,995,704 - Ga0059261_3887 0.60 -0.8
3,995,704 - Ga0059261_3887 0.60 -0.4
3,995,704 - Ga0059261_3887 0.60 +0.7
3,995,704 - Ga0059261_3887 0.60 +0.6
3,995,756 + Ga0059261_3887 0.66 -0.2
3,995,756 + Ga0059261_3887 0.66 -0.2
3,995,756 + Ga0059261_3887 0.66 +0.2
3,995,756 + Ga0059261_3887 0.66 +0.8
3,995,756 + Ga0059261_3887 0.66 +0.5
3,995,756 + Ga0059261_3887 0.66 -0.0
3,995,757 - Ga0059261_3887 0.66 -0.6
3,995,757 - Ga0059261_3887 0.66 +0.5
3,995,757 - Ga0059261_3887 0.66 +0.2
3,995,763 + Ga0059261_3887 0.67 -0.4
3,995,763 + Ga0059261_3887 0.67 +0.4
3,995,763 + +2.5
3,995,764 - Ga0059261_3887 0.67 +0.4
3,995,772 + Ga0059261_3887 0.68 -0.4
3,995,772 + Ga0059261_3887 0.68 -0.0
3,995,772 + Ga0059261_3887 0.68 +0.2
3,995,772 + Ga0059261_3887 0.68 +1.7
3,995,772 + Ga0059261_3887 0.68 -2.0
3,995,772 + Ga0059261_3887 0.68 -0.0
3,995,772 + Ga0059261_3887 0.68 +0.1
3,995,772 + Ga0059261_3887 0.68 -0.2
3,995,772 + Ga0059261_3887 0.68 +0.9
3,995,772 + Ga0059261_3887 0.68 +1.0
3,995,772 + Ga0059261_3887 0.68 +0.3
3,995,773 - Ga0059261_3887 0.68 +0.6
3,995,773 - Ga0059261_3887 0.68 +0.3
3,995,773 - Ga0059261_3887 0.68 -1.4
3,995,773 - Ga0059261_3887 0.68 -0.6
3,995,773 - Ga0059261_3887 0.68 -0.7
3,995,773 - Ga0059261_3887 0.68 +0.2
3,995,773 - Ga0059261_3887 0.68 +1.1
3,995,773 - Ga0059261_3887 0.68 +0.0
3,995,773 - Ga0059261_3887 0.68 +0.8
3,995,773 - Ga0059261_3887 0.68 +0.3
3,995,773 - Ga0059261_3887 0.68 +0.9
3,995,828 + +0.9
3,995,828 + Ga0059261_3887 0.75 -0.4
3,995,828 + Ga0059261_3887 0.75 -0.2
3,995,828 + Ga0059261_3887 0.75 +0.9
3,995,828 + Ga0059261_3887 0.75 -0.3
3,995,828 + Ga0059261_3887 0.75 +0.4
3,995,828 + Ga0059261_3887 0.75 +0.1
3,995,828 + Ga0059261_3887 0.75 +0.6
3,995,829 - Ga0059261_3887 0.75 -0.7
3,995,829 - Ga0059261_3887 0.75 -0.1
3,995,829 - Ga0059261_3887 0.75 -0.3
3,995,829 - Ga0059261_3887 0.75 -0.6
3,995,829 - Ga0059261_3887 0.75 -0.5
3,995,829 - Ga0059261_3887 0.75 -1.3
3,995,829 - Ga0059261_3887 0.75 -0.1
3,995,829 - Ga0059261_3887 0.75 -1.6
3,995,829 - Ga0059261_3887 0.75 -0.8
3,995,829 - Ga0059261_3887 0.75 -0.5
3,995,886 + Ga0059261_3887 0.81 +0.0
3,995,886 + Ga0059261_3887 0.81 +1.7
3,995,887 - Ga0059261_3887 0.81 +0.8
3,995,949 - Ga0059261_3887 0.89 -0.1
3,995,979 + -0.2
3,995,979 + -2.4
3,995,979 + +0.5
3,995,980 - -0.1
3,995,980 - +0.6
3,995,980 - -0.1
3,995,980 - -0.2
3,995,980 - +0.2
3,995,980 - +0.0
3,995,980 - -1.3
3,995,989 - +0.2
3,996,042 + +0.4
3,996,042 + +0.1
3,996,042 + -1.3
3,996,043 - -0.2
3,996,043 - -0.2
3,996,243 - Ga0059261_3888 0.21 +1.3
3,996,267 + Ga0059261_3888 0.23 -0.2
3,996,268 - Ga0059261_3888 0.23 +0.9
3,996,268 - -0.4
3,996,405 - Ga0059261_3888 0.34 -0.0
3,996,405 - -0.1
3,996,479 + Ga0059261_3888 0.40 +0.3
3,996,479 + Ga0059261_3888 0.40 -0.4
3,996,479 + Ga0059261_3888 0.40 -0.6
3,996,479 + Ga0059261_3888 0.40 +1.0
3,996,480 - Ga0059261_3888 0.41 -0.2
3,996,480 - Ga0059261_3888 0.41 -1.1
3,996,480 - Ga0059261_3888 0.41 +0.2
3,996,480 - Ga0059261_3888 0.41 +0.4
3,996,480 - Ga0059261_3888 0.41 -1.0
3,996,482 + Ga0059261_3888 0.41 +0.3
3,996,482 + +0.6
3,996,483 - Ga0059261_3888 0.41 +0.7
3,996,483 - Ga0059261_3888 0.41 -0.5
3,996,483 - Ga0059261_3888 0.41 -0.9
3,996,483 - Ga0059261_3888 0.41 +0.6
3,996,491 + Ga0059261_3888 0.41 -0.3
3,996,491 + Ga0059261_3888 0.41 +1.0
3,996,491 + Ga0059261_3888 0.41 +0.3
3,996,491 + +0.9
3,996,491 + Ga0059261_3888 0.41 -0.6
3,996,492 - Ga0059261_3888 0.42 +0.5
3,996,492 - Ga0059261_3888 0.42 -0.3
3,996,492 - Ga0059261_3888 0.42 -0.9

Or see this region's nucleotide sequence