Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02654 and CCNA_02655 are separated by 190 nucleotides CCNA_02655 and CCNA_02656 are separated by 67 nucleotides CCNA_02656 and CCNA_02657 are separated by 12 nucleotides CCNA_02657 and CCNA_02658 are separated by 2 nucleotides
CCNA_02654: CCNA_02654 - hypothetical protein, at 2,808,208 to 2,808,585
_02654
CCNA_02655: CCNA_02655 - NTF2 superfamily protein, at 2,808,776 to 2,809,300
_02655
CCNA_02656: CCNA_02656 - AraC-family transcriptional regulator, at 2,809,368 to 2,810,180
_02656
CCNA_02657: CCNA_02657 - hypothetical protein, at 2,810,193 to 2,810,789
_02657
CCNA_02658: CCNA_02658 - 3-hydroxybutyryl-CoA dehydratase, at 2,810,792 to 2,811,589
_02658
Position (kb)
2809
2810
2811 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2808.368 kb on - strand, within CCNA_02654 at 2808.386 kb on + strand, within CCNA_02654 at 2808.410 kb on + strand, within CCNA_02654 at 2808.418 kb on - strand, within CCNA_02654 at 2808.444 kb on + strand, within CCNA_02654 at 2808.513 kb on + strand, within CCNA_02654 at 2808.550 kb on + strand at 2808.550 kb on + strand at 2808.584 kb on - strand at 2808.626 kb on - strand at 2808.630 kb on + strand at 2808.632 kb on - strand at 2808.636 kb on + strand at 2808.636 kb on + strand at 2808.636 kb on + strand at 2808.636 kb on + strand at 2808.636 kb on + strand at 2808.636 kb on + strand at 2808.643 kb on + strand at 2808.644 kb on - strand at 2808.644 kb on - strand at 2808.644 kb on - strand at 2808.644 kb on - strand at 2808.645 kb on - strand at 2808.649 kb on + strand at 2808.649 kb on + strand at 2808.649 kb on + strand at 2808.657 kb on - strand at 2808.657 kb on - strand at 2808.657 kb on - strand at 2808.680 kb on - strand at 2808.680 kb on - strand at 2808.687 kb on + strand at 2808.712 kb on - strand at 2808.719 kb on + strand at 2808.727 kb on - strand at 2808.756 kb on + strand at 2808.756 kb on + strand at 2808.760 kb on + strand at 2808.799 kb on - strand at 2808.829 kb on + strand, within CCNA_02655 at 2808.831 kb on + strand, within CCNA_02655 at 2808.856 kb on + strand, within CCNA_02655 at 2808.884 kb on - strand, within CCNA_02655 at 2808.941 kb on - strand, within CCNA_02655 at 2808.950 kb on - strand, within CCNA_02655 at 2808.950 kb on - strand, within CCNA_02655 at 2808.954 kb on - strand, within CCNA_02655 at 2808.967 kb on + strand, within CCNA_02655 at 2808.975 kb on - strand, within CCNA_02655 at 2808.994 kb on + strand, within CCNA_02655 at 2809.001 kb on + strand, within CCNA_02655 at 2809.002 kb on - strand, within CCNA_02655 at 2809.002 kb on - strand, within CCNA_02655 at 2809.032 kb on - strand, within CCNA_02655 at 2809.042 kb on + strand, within CCNA_02655 at 2809.077 kb on - strand, within CCNA_02655 at 2809.100 kb on - strand, within CCNA_02655 at 2809.113 kb on - strand, within CCNA_02655 at 2809.175 kb on - strand, within CCNA_02655 at 2809.184 kb on - strand, within CCNA_02655 at 2809.230 kb on - strand, within CCNA_02655 at 2809.308 kb on + strand at 2809.308 kb on + strand at 2809.308 kb on + strand at 2809.316 kb on - strand at 2809.316 kb on - strand at 2809.316 kb on - strand at 2809.367 kb on - strand at 2809.373 kb on - strand at 2809.379 kb on - strand at 2809.379 kb on - strand at 2809.383 kb on - strand at 2809.434 kb on - strand at 2809.448 kb on + strand at 2809.566 kb on + strand, within CCNA_02656 at 2809.582 kb on - strand, within CCNA_02656 at 2809.650 kb on + strand, within CCNA_02656 at 2809.658 kb on - strand, within CCNA_02656 at 2809.660 kb on - strand, within CCNA_02656 at 2809.725 kb on - strand, within CCNA_02656 at 2809.735 kb on + strand, within CCNA_02656 at 2809.763 kb on + strand, within CCNA_02656 at 2809.773 kb on - strand, within CCNA_02656 at 2809.773 kb on - strand, within CCNA_02656 at 2809.834 kb on + strand, within CCNA_02656 at 2809.842 kb on - strand, within CCNA_02656 at 2809.847 kb on - strand, within CCNA_02656 at 2809.858 kb on + strand, within CCNA_02656 at 2809.867 kb on + strand, within CCNA_02656 at 2809.877 kb on - strand, within CCNA_02656 at 2809.894 kb on + strand, within CCNA_02656 at 2809.940 kb on + strand, within CCNA_02656 at 2809.948 kb on - strand, within CCNA_02656 at 2809.948 kb on - strand, within CCNA_02656 at 2809.956 kb on + strand, within CCNA_02656 at 2809.957 kb on + strand, within CCNA_02656 at 2809.964 kb on - strand, within CCNA_02656 at 2809.964 kb on - strand, within CCNA_02656 at 2809.993 kb on - strand, within CCNA_02656 at 2810.055 kb on + strand, within CCNA_02656 at 2810.063 kb on - strand, within CCNA_02656 at 2810.144 kb on + strand at 2810.153 kb on - strand at 2810.190 kb on + strand at 2810.208 kb on - strand at 2810.225 kb on - strand at 2810.225 kb on - strand at 2810.250 kb on + strand at 2810.252 kb on - strand at 2810.275 kb on - strand, within CCNA_02657 at 2810.284 kb on + strand, within CCNA_02657 at 2810.299 kb on - strand, within CCNA_02657 at 2810.310 kb on + strand, within CCNA_02657 at 2810.312 kb on - strand, within CCNA_02657 at 2810.312 kb on - strand, within CCNA_02657 at 2810.317 kb on + strand, within CCNA_02657 at 2810.317 kb on + strand, within CCNA_02657 at 2810.324 kb on - strand, within CCNA_02657 at 2810.351 kb on - strand, within CCNA_02657 at 2810.403 kb on + strand at 2810.559 kb on + strand, within CCNA_02657 at 2810.591 kb on + strand, within CCNA_02657 at 2810.591 kb on + strand, within CCNA_02657 at 2810.596 kb on + strand, within CCNA_02657 at 2810.612 kb on - strand, within CCNA_02657 at 2810.622 kb on + strand, within CCNA_02657 at 2810.641 kb on - strand, within CCNA_02657 at 2810.642 kb on - strand, within CCNA_02657 at 2810.672 kb on - strand, within CCNA_02657 at 2810.675 kb on + strand, within CCNA_02657 at 2810.683 kb on - strand, within CCNA_02657 at 2810.683 kb on - strand, within CCNA_02657 at 2810.687 kb on + strand, within CCNA_02657 at 2810.777 kb on + strand at 2810.787 kb on - strand at 2810.801 kb on + strand at 2810.806 kb on + strand at 2810.806 kb on + strand at 2810.806 kb on + strand at 2810.806 kb on + strand at 2810.807 kb on - strand at 2810.807 kb on - strand at 2810.807 kb on - strand at 2810.807 kb on - strand at 2810.807 kb on - strand at 2810.807 kb on - strand at 2810.809 kb on - strand at 2810.809 kb on - strand at 2810.841 kb on - strand at 2810.904 kb on - strand, within CCNA_02658 at 2810.946 kb on + strand, within CCNA_02658 at 2810.954 kb on - strand, within CCNA_02658 at 2810.996 kb on - strand, within CCNA_02658 at 2811.000 kb on - strand, within CCNA_02658 at 2811.001 kb on - strand, within CCNA_02658 at 2811.057 kb on + strand, within CCNA_02658 at 2811.065 kb on - strand, within CCNA_02658 at 2811.107 kb on + strand, within CCNA_02658 at 2811.120 kb on - strand, within CCNA_02658 at 2811.127 kb on + strand, within CCNA_02658
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 2,808,368 - CCNA_02654 0.42 -0.8 2,808,386 + CCNA_02654 0.47 -0.0 2,808,410 + CCNA_02654 0.53 -2.0 2,808,418 - CCNA_02654 0.56 -0.6 2,808,444 + CCNA_02654 0.62 -2.4 2,808,513 + CCNA_02654 0.81 -1.3 2,808,550 + -0.3 2,808,550 + -0.1 2,808,584 - -0.4 2,808,626 - -2.6 2,808,630 + +0.9 2,808,632 - -1.0 2,808,636 + -0.4 2,808,636 + -1.4 2,808,636 + -0.6 2,808,636 + -0.8 2,808,636 + -1.1 2,808,636 + -1.4 2,808,643 + +0.2 2,808,644 - -2.1 2,808,644 - -1.3 2,808,644 - -1.5 2,808,644 - -0.4 2,808,645 - -0.4 2,808,649 + -2.0 2,808,649 + +0.2 2,808,649 + -0.6 2,808,657 - +1.6 2,808,657 - -0.3 2,808,657 - -1.7 2,808,680 - +0.2 2,808,680 - -0.2 2,808,687 + -0.8 2,808,712 - +0.9 2,808,719 + -1.7 2,808,727 - +3.1 2,808,756 + -2.0 2,808,756 + -2.9 2,808,760 + -0.3 2,808,799 - -0.1 2,808,829 + CCNA_02655 0.10 -2.3 2,808,831 + CCNA_02655 0.10 -1.4 2,808,856 + CCNA_02655 0.15 -2.9 2,808,884 - CCNA_02655 0.21 -1.4 2,808,941 - CCNA_02655 0.31 -2.0 2,808,950 - CCNA_02655 0.33 -1.3 2,808,950 - CCNA_02655 0.33 +1.2 2,808,954 - CCNA_02655 0.34 -1.4 2,808,967 + CCNA_02655 0.36 -1.5 2,808,975 - CCNA_02655 0.38 -1.0 2,808,994 + CCNA_02655 0.42 -0.4 2,809,001 + CCNA_02655 0.43 -2.9 2,809,002 - CCNA_02655 0.43 -1.9 2,809,002 - CCNA_02655 0.43 -2.3 2,809,032 - CCNA_02655 0.49 +1.2 2,809,042 + CCNA_02655 0.51 +0.1 2,809,077 - CCNA_02655 0.57 -0.3 2,809,100 - CCNA_02655 0.62 -1.2 2,809,113 - CCNA_02655 0.64 +0.2 2,809,175 - CCNA_02655 0.76 -0.3 2,809,184 - CCNA_02655 0.78 -1.1 2,809,230 - CCNA_02655 0.86 -1.6 2,809,308 + -0.0 2,809,308 + -1.0 2,809,308 + -1.6 2,809,316 - -1.2 2,809,316 - -1.0 2,809,316 - -2.2 2,809,367 - -0.3 2,809,373 - -0.1 2,809,379 - -0.7 2,809,379 - -1.9 2,809,383 - -1.3 2,809,434 - -0.9 2,809,448 + -0.3 2,809,566 + CCNA_02656 0.24 -1.4 2,809,582 - CCNA_02656 0.26 -0.3 2,809,650 + CCNA_02656 0.35 +0.4 2,809,658 - CCNA_02656 0.36 +0.2 2,809,660 - CCNA_02656 0.36 +0.3 2,809,725 - CCNA_02656 0.44 +2.2 2,809,735 + CCNA_02656 0.45 -2.5 2,809,763 + CCNA_02656 0.49 -1.2 2,809,773 - CCNA_02656 0.50 -0.1 2,809,773 - CCNA_02656 0.50 -0.6 2,809,834 + CCNA_02656 0.57 -1.1 2,809,842 - CCNA_02656 0.58 -0.4 2,809,847 - CCNA_02656 0.59 +1.9 2,809,858 + CCNA_02656 0.60 -0.6 2,809,867 + CCNA_02656 0.61 -1.7 2,809,877 - CCNA_02656 0.63 +1.5 2,809,894 + CCNA_02656 0.65 -2.1 2,809,940 + CCNA_02656 0.70 -0.7 2,809,948 - CCNA_02656 0.71 -0.6 2,809,948 - CCNA_02656 0.71 +0.1 2,809,956 + CCNA_02656 0.72 -2.2 2,809,957 + CCNA_02656 0.72 +1.4 2,809,964 - CCNA_02656 0.73 -2.1 2,809,964 - CCNA_02656 0.73 -1.0 2,809,993 - CCNA_02656 0.77 -1.0 2,810,055 + CCNA_02656 0.85 -0.5 2,810,063 - CCNA_02656 0.85 -1.4 2,810,144 + -1.1 2,810,153 - -0.1 2,810,190 + -2.3 2,810,208 - +0.4 2,810,225 - +0.2 2,810,225 - +0.1 2,810,250 + +0.2 2,810,252 - +0.6 2,810,275 - CCNA_02657 0.14 +0.5 2,810,284 + CCNA_02657 0.15 -0.6 2,810,299 - CCNA_02657 0.18 +0.5 2,810,310 + CCNA_02657 0.20 -0.6 2,810,312 - CCNA_02657 0.20 +0.3 2,810,312 - CCNA_02657 0.20 +0.6 2,810,317 + CCNA_02657 0.21 -1.6 2,810,317 + CCNA_02657 0.21 -1.0 2,810,324 - CCNA_02657 0.22 +0.4 2,810,351 - CCNA_02657 0.26 +1.5 2,810,403 + +0.6 2,810,559 + CCNA_02657 0.61 -1.1 2,810,591 + CCNA_02657 0.67 +0.3 2,810,591 + CCNA_02657 0.67 +0.2 2,810,596 + CCNA_02657 0.68 -0.9 2,810,612 - CCNA_02657 0.70 -1.1 2,810,622 + CCNA_02657 0.72 -0.2 2,810,641 - CCNA_02657 0.75 -0.6 2,810,642 - CCNA_02657 0.75 +1.6 2,810,672 - CCNA_02657 0.80 +2.2 2,810,675 + CCNA_02657 0.81 -1.8 2,810,683 - CCNA_02657 0.82 +0.5 2,810,683 - CCNA_02657 0.82 +0.7 2,810,687 + CCNA_02657 0.83 -0.3 2,810,777 + +0.2 2,810,787 - +0.5 2,810,801 + -0.1 2,810,806 + +2.7 2,810,806 + +1.7 2,810,806 + +1.3 2,810,806 + -0.8 2,810,807 - +0.2 2,810,807 - +1.1 2,810,807 - +0.9 2,810,807 - -0.4 2,810,807 - +1.3 2,810,807 - +1.2 2,810,809 - +0.2 2,810,809 - +0.3 2,810,841 - +0.5 2,810,904 - CCNA_02658 0.14 +0.9 2,810,946 + CCNA_02658 0.19 -2.6 2,810,954 - CCNA_02658 0.20 +1.2 2,810,996 - CCNA_02658 0.26 -0.8 2,811,000 - CCNA_02658 0.26 -0.6 2,811,001 - CCNA_02658 0.26 -0.5 2,811,057 + CCNA_02658 0.33 -2.3 2,811,065 - CCNA_02658 0.34 -2.2 2,811,107 + CCNA_02658 0.39 -2.0 2,811,120 - CCNA_02658 0.41 -2.4 2,811,127 + CCNA_02658 0.42 +0.2
Or see this region's nucleotide sequence