Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00904 and CCNA_00905 are separated by 28 nucleotides CCNA_00905 and CCNA_00906 are separated by 69 nucleotides CCNA_00906 and CCNA_00907 overlap by 4 nucleotides CCNA_00907 and CCNA_00908 overlap by 64 nucleotides
CCNA_00904: CCNA_00904 - inositol ABC transport system, permease protein IatP, at 984,482 to 985,480
_00904
CCNA_00905: CCNA_00905 - exonuclease-endonuclease-phosphatase (EEP1) protein, at 985,509 to 986,396
_00905
CCNA_00906: CCNA_00906 - hypothetical protein, at 986,466 to 987,380
_00906
CCNA_00907: CCNA_00907 - hypothetical protein, at 987,377 to 988,105
_00907
CCNA_00908: CCNA_00908 - 3-oxoacyl-(acyl-carrier-protein) synthase III, at 988,042 to 989,181
_00908
Position (kb) 986
987
988 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 985.467 kb on + strand at 985.475 kb on + strand at 985.475 kb on + strand at 985.483 kb on - strand at 985.485 kb on + strand at 985.492 kb on + strand at 985.497 kb on + strand at 985.500 kb on - strand at 985.505 kb on - strand at 985.505 kb on - strand at 985.505 kb on - strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.514 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.519 kb on + strand at 985.521 kb on - strand at 985.567 kb on - strand at 985.567 kb on - strand at 985.570 kb on - strand at 985.607 kb on + strand, within CCNA_00905 at 985.607 kb on + strand, within CCNA_00905 at 985.673 kb on + strand, within CCNA_00905 at 985.678 kb on + strand, within CCNA_00905 at 985.678 kb on + strand, within CCNA_00905 at 985.696 kb on - strand, within CCNA_00905 at 985.798 kb on + strand, within CCNA_00905 at 985.798 kb on + strand, within CCNA_00905 at 985.806 kb on - strand, within CCNA_00905 at 985.849 kb on + strand, within CCNA_00905 at 985.854 kb on + strand, within CCNA_00905 at 985.854 kb on + strand, within CCNA_00905 at 985.854 kb on + strand, within CCNA_00905 at 985.862 kb on - strand, within CCNA_00905 at 985.862 kb on - strand, within CCNA_00905 at 985.862 kb on - strand, within CCNA_00905 at 985.862 kb on - strand, within CCNA_00905 at 985.873 kb on + strand, within CCNA_00905 at 985.873 kb on + strand, within CCNA_00905 at 985.896 kb on + strand, within CCNA_00905 at 985.896 kb on + strand, within CCNA_00905 at 985.904 kb on - strand, within CCNA_00905 at 985.944 kb on + strand, within CCNA_00905 at 985.956 kb on - strand, within CCNA_00905 at 985.966 kb on + strand, within CCNA_00905 at 985.966 kb on + strand, within CCNA_00905 at 985.971 kb on + strand, within CCNA_00905 at 986.012 kb on + strand, within CCNA_00905 at 986.029 kb on + strand, within CCNA_00905 at 986.037 kb on - strand, within CCNA_00905 at 986.037 kb on - strand, within CCNA_00905 at 986.037 kb on - strand, within CCNA_00905 at 986.044 kb on + strand, within CCNA_00905 at 986.052 kb on - strand, within CCNA_00905 at 986.109 kb on + strand, within CCNA_00905 at 986.109 kb on + strand, within CCNA_00905 at 986.113 kb on + strand, within CCNA_00905 at 986.128 kb on - strand, within CCNA_00905 at 986.138 kb on + strand, within CCNA_00905 at 986.166 kb on + strand, within CCNA_00905 at 986.177 kb on + strand, within CCNA_00905 at 986.229 kb on - strand, within CCNA_00905 at 986.309 kb on - strand at 986.338 kb on + strand at 986.338 kb on + strand at 986.372 kb on + strand at 986.380 kb on - strand at 986.391 kb on + strand at 986.391 kb on + strand at 986.391 kb on + strand at 986.391 kb on + strand at 986.399 kb on - strand at 986.399 kb on - strand at 986.399 kb on - strand at 986.427 kb on + strand at 986.427 kb on - strand at 986.434 kb on - strand at 986.448 kb on - strand at 986.463 kb on + strand at 986.519 kb on + strand at 986.532 kb on - strand at 986.552 kb on - strand at 986.565 kb on - strand, within CCNA_00906 at 986.570 kb on - strand, within CCNA_00906 at 986.570 kb on - strand, within CCNA_00906 at 986.570 kb on - strand, within CCNA_00906 at 986.583 kb on + strand, within CCNA_00906 at 986.602 kb on + strand, within CCNA_00906 at 986.602 kb on + strand, within CCNA_00906 at 986.650 kb on - strand, within CCNA_00906 at 986.666 kb on - strand, within CCNA_00906 at 986.736 kb on + strand, within CCNA_00906 at 986.736 kb on + strand, within CCNA_00906 at 986.761 kb on + strand, within CCNA_00906 at 986.761 kb on + strand, within CCNA_00906 at 986.769 kb on - strand, within CCNA_00906 at 986.769 kb on - strand, within CCNA_00906 at 986.769 kb on - strand, within CCNA_00906 at 986.769 kb on - strand, within CCNA_00906 at 986.769 kb on - strand, within CCNA_00906 at 986.776 kb on - strand, within CCNA_00906 at 986.794 kb on + strand, within CCNA_00906 at 986.806 kb on + strand, within CCNA_00906 at 986.814 kb on - strand, within CCNA_00906 at 986.814 kb on - strand at 986.879 kb on + strand, within CCNA_00906 at 986.887 kb on - strand, within CCNA_00906 at 986.933 kb on + strand, within CCNA_00906 at 986.941 kb on - strand, within CCNA_00906 at 986.948 kb on + strand, within CCNA_00906 at 986.972 kb on + strand, within CCNA_00906 at 986.972 kb on + strand, within CCNA_00906 at 986.972 kb on + strand, within CCNA_00906 at 986.972 kb on + strand, within CCNA_00906 at 986.972 kb on + strand, within CCNA_00906 at 986.980 kb on - strand, within CCNA_00906 at 987.001 kb on + strand, within CCNA_00906 at 987.009 kb on - strand, within CCNA_00906 at 987.028 kb on + strand, within CCNA_00906 at 987.030 kb on - strand, within CCNA_00906 at 987.039 kb on + strand, within CCNA_00906 at 987.060 kb on - strand, within CCNA_00906 at 987.067 kb on - strand, within CCNA_00906 at 987.074 kb on + strand, within CCNA_00906 at 987.074 kb on + strand, within CCNA_00906 at 987.095 kb on - strand, within CCNA_00906 at 987.095 kb on - strand, within CCNA_00906 at 987.095 kb on - strand, within CCNA_00906 at 987.095 kb on - strand, within CCNA_00906 at 987.127 kb on + strand, within CCNA_00906 at 987.135 kb on - strand, within CCNA_00906 at 987.135 kb on - strand, within CCNA_00906 at 987.135 kb on - strand, within CCNA_00906 at 987.142 kb on + strand, within CCNA_00906 at 987.142 kb on + strand, within CCNA_00906 at 987.144 kb on + strand, within CCNA_00906 at 987.150 kb on - strand, within CCNA_00906 at 987.152 kb on - strand, within CCNA_00906 at 987.152 kb on - strand, within CCNA_00906 at 987.157 kb on - strand, within CCNA_00906 at 987.172 kb on - strand, within CCNA_00906 at 987.231 kb on - strand, within CCNA_00906 at 987.242 kb on + strand, within CCNA_00906 at 987.247 kb on - strand, within CCNA_00906 at 987.259 kb on + strand, within CCNA_00906 at 987.259 kb on + strand, within CCNA_00906 at 987.259 kb on + strand, within CCNA_00906 at 987.267 kb on - strand, within CCNA_00906 at 987.267 kb on - strand, within CCNA_00906 at 987.267 kb on - strand, within CCNA_00906 at 987.267 kb on - strand, within CCNA_00906 at 987.282 kb on - strand, within CCNA_00906 at 987.282 kb on - strand, within CCNA_00906 at 987.282 kb on - strand, within CCNA_00906 at 987.301 kb on + strand at 987.305 kb on + strand at 987.305 kb on + strand at 987.305 kb on + strand at 987.310 kb on + strand at 987.313 kb on - strand at 987.322 kb on + strand at 987.330 kb on - strand at 987.359 kb on + strand at 987.372 kb on - strand at 987.374 kb on + strand at 987.405 kb on + strand at 987.405 kb on + strand at 987.405 kb on + strand at 987.405 kb on + strand at 987.413 kb on - strand at 987.413 kb on - strand at 987.472 kb on - strand, within CCNA_00907 at 987.477 kb on - strand, within CCNA_00907 at 987.518 kb on - strand, within CCNA_00907 at 987.535 kb on - strand, within CCNA_00907 at 987.549 kb on - strand, within CCNA_00907 at 987.567 kb on - strand, within CCNA_00907 at 987.567 kb on - strand, within CCNA_00907 at 987.596 kb on + strand, within CCNA_00907 at 987.604 kb on - strand, within CCNA_00907 at 987.607 kb on + strand, within CCNA_00907 at 987.616 kb on - strand, within CCNA_00907 at 987.631 kb on - strand, within CCNA_00907 at 987.660 kb on - strand, within CCNA_00907 at 987.666 kb on - strand, within CCNA_00907 at 987.806 kb on + strand, within CCNA_00907 at 987.806 kb on + strand, within CCNA_00907 at 987.806 kb on - strand, within CCNA_00907 at 987.814 kb on - strand, within CCNA_00907 at 987.814 kb on - strand, within CCNA_00907 at 987.819 kb on - strand, within CCNA_00907 at 987.823 kb on + strand, within CCNA_00907 at 987.823 kb on + strand, within CCNA_00907 at 987.823 kb on + strand, within CCNA_00907 at 987.823 kb on + strand, within CCNA_00907 at 987.830 kb on - strand, within CCNA_00907 at 987.831 kb on - strand, within CCNA_00907 at 987.853 kb on + strand, within CCNA_00907 at 987.881 kb on - strand, within CCNA_00907 at 987.886 kb on - strand, within CCNA_00907 at 987.887 kb on - strand, within CCNA_00907 at 987.887 kb on - strand, within CCNA_00907 at 987.935 kb on - strand, within CCNA_00907 at 987.935 kb on - strand, within CCNA_00907 at 987.956 kb on + strand, within CCNA_00907 at 987.956 kb on + strand, within CCNA_00907 at 987.964 kb on - strand, within CCNA_00907 at 987.964 kb on - strand, within CCNA_00907 at 988.060 kb on - strand at 988.060 kb on - strand at 988.062 kb on + strand at 988.070 kb on - strand at 988.100 kb on + strand at 988.105 kb on + strand at 988.111 kb on + strand at 988.120 kb on - strand at 988.129 kb on - strand at 988.129 kb on - strand at 988.136 kb on + strand at 988.144 kb on - strand at 988.155 kb on + strand at 988.165 kb on + strand, within CCNA_00908 at 988.168 kb on - strand, within CCNA_00908 at 988.170 kb on + strand, within CCNA_00908 at 988.189 kb on - strand, within CCNA_00908 at 988.198 kb on - strand, within CCNA_00908 at 988.296 kb on + strand, within CCNA_00908 at 988.304 kb on - strand, within CCNA_00908 at 988.316 kb on + strand, within CCNA_00908 at 988.322 kb on + strand, within CCNA_00908 at 988.347 kb on + strand, within CCNA_00908 at 988.355 kb on - strand, within CCNA_00908 at 988.363 kb on + strand, within CCNA_00908
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 985,467 + +0.0 985,475 + +0.4 985,475 + +1.1 985,483 - -1.3 985,485 + +0.0 985,492 + +0.8 985,497 + -0.1 985,500 - +0.7 985,505 - -2.5 985,505 - +0.7 985,505 - -0.1 985,507 + +0.8 985,507 + +0.2 985,507 + +2.1 985,507 + -0.1 985,507 + -0.2 985,507 + -0.2 985,507 + -0.9 985,507 + -1.8 985,507 + -0.2 985,507 + -0.3 985,507 + +0.3 985,507 + +0.3 985,507 + +0.4 985,507 + +0.9 985,507 + -0.9 985,507 + +0.2 985,507 + -0.0 985,507 + -0.2 985,507 + +0.3 985,514 - -2.0 985,515 - -1.2 985,515 - -0.8 985,515 - -0.9 985,515 - -1.1 985,515 - -0.6 985,515 - -2.2 985,515 - +1.0 985,515 - -0.5 985,515 - -2.8 985,515 - -1.9 985,515 - -2.4 985,515 - -1.0 985,519 + -0.3 985,521 - -1.4 985,567 - -1.4 985,567 - -0.3 985,570 - +0.9 985,607 + CCNA_00905 0.11 -0.1 985,607 + CCNA_00905 0.11 -0.7 985,673 + CCNA_00905 0.18 -0.8 985,678 + CCNA_00905 0.19 +0.9 985,678 + CCNA_00905 0.19 -3.5 985,696 - CCNA_00905 0.21 -0.8 985,798 + CCNA_00905 0.33 -0.5 985,798 + CCNA_00905 0.33 -0.5 985,806 - CCNA_00905 0.33 -2.2 985,849 + CCNA_00905 0.38 -0.3 985,854 + CCNA_00905 0.39 -1.1 985,854 + CCNA_00905 0.39 -1.9 985,854 + CCNA_00905 0.39 -1.3 985,862 - CCNA_00905 0.40 -2.0 985,862 - CCNA_00905 0.40 -0.5 985,862 - CCNA_00905 0.40 -1.7 985,862 - CCNA_00905 0.40 -0.5 985,873 + CCNA_00905 0.41 +0.5 985,873 + CCNA_00905 0.41 -1.7 985,896 + CCNA_00905 0.44 +0.4 985,896 + CCNA_00905 0.44 -1.0 985,904 - CCNA_00905 0.44 -2.4 985,944 + CCNA_00905 0.49 -1.7 985,956 - CCNA_00905 0.50 -1.4 985,966 + CCNA_00905 0.51 -0.2 985,966 + CCNA_00905 0.51 -4.0 985,971 + CCNA_00905 0.52 -2.1 986,012 + CCNA_00905 0.57 -2.1 986,029 + CCNA_00905 0.59 -1.5 986,037 - CCNA_00905 0.59 -1.6 986,037 - CCNA_00905 0.59 +0.4 986,037 - CCNA_00905 0.59 -0.8 986,044 + CCNA_00905 0.60 -1.7 986,052 - CCNA_00905 0.61 -1.2 986,109 + CCNA_00905 0.68 -1.0 986,109 + CCNA_00905 0.68 +0.3 986,113 + CCNA_00905 0.68 -0.9 986,128 - CCNA_00905 0.70 -0.7 986,138 + CCNA_00905 0.71 -1.9 986,166 + CCNA_00905 0.74 -0.1 986,177 + CCNA_00905 0.75 -1.9 986,229 - CCNA_00905 0.81 +0.5 986,309 - -0.4 986,338 + -0.5 986,338 + -0.1 986,372 + +0.7 986,380 - -1.9 986,391 + -0.4 986,391 + -1.3 986,391 + -0.2 986,391 + -0.3 986,399 - +0.7 986,399 - -0.5 986,399 - -1.0 986,427 + +0.1 986,427 - +0.3 986,434 - +0.6 986,448 - -1.5 986,463 + -2.4 986,519 + -1.4 986,532 - +0.1 986,552 - +0.1 986,565 - CCNA_00906 0.11 +0.6 986,570 - CCNA_00906 0.11 +1.7 986,570 - CCNA_00906 0.11 +0.3 986,570 - CCNA_00906 0.11 +0.8 986,583 + CCNA_00906 0.13 -0.4 986,602 + CCNA_00906 0.15 +1.1 986,602 + CCNA_00906 0.15 -0.9 986,650 - CCNA_00906 0.20 -0.4 986,666 - CCNA_00906 0.22 -0.3 986,736 + CCNA_00906 0.30 -1.5 986,736 + CCNA_00906 0.30 -2.4 986,761 + CCNA_00906 0.32 -0.6 986,761 + CCNA_00906 0.32 -0.3 986,769 - CCNA_00906 0.33 -0.1 986,769 - CCNA_00906 0.33 -1.2 986,769 - CCNA_00906 0.33 +0.4 986,769 - CCNA_00906 0.33 +0.3 986,769 - CCNA_00906 0.33 +0.3 986,776 - CCNA_00906 0.34 +1.3 986,794 + CCNA_00906 0.36 +0.5 986,806 + CCNA_00906 0.37 -1.6 986,814 - CCNA_00906 0.38 -1.2 986,814 - +1.1 986,879 + CCNA_00906 0.45 -1.7 986,887 - CCNA_00906 0.46 -3.3 986,933 + CCNA_00906 0.51 +0.3 986,941 - CCNA_00906 0.52 -3.2 986,948 + CCNA_00906 0.53 -3.5 986,972 + CCNA_00906 0.55 +0.9 986,972 + CCNA_00906 0.55 -1.3 986,972 + CCNA_00906 0.55 -0.9 986,972 + CCNA_00906 0.55 -0.9 986,972 + CCNA_00906 0.55 -1.5 986,980 - CCNA_00906 0.56 -0.3 987,001 + CCNA_00906 0.58 -1.8 987,009 - CCNA_00906 0.59 -0.2 987,028 + CCNA_00906 0.61 -1.5 987,030 - CCNA_00906 0.62 +1.9 987,039 + CCNA_00906 0.63 -1.7 987,060 - CCNA_00906 0.65 +1.2 987,067 - CCNA_00906 0.66 -2.0 987,074 + CCNA_00906 0.66 -2.6 987,074 + CCNA_00906 0.66 +0.6 987,095 - CCNA_00906 0.69 -1.0 987,095 - CCNA_00906 0.69 -0.8 987,095 - CCNA_00906 0.69 -0.2 987,095 - CCNA_00906 0.69 -1.3 987,127 + CCNA_00906 0.72 -2.9 987,135 - CCNA_00906 0.73 -0.9 987,135 - CCNA_00906 0.73 -0.7 987,135 - CCNA_00906 0.73 +0.1 987,142 + CCNA_00906 0.74 -2.0 987,142 + CCNA_00906 0.74 -2.9 987,144 + CCNA_00906 0.74 -0.0 987,150 - CCNA_00906 0.75 -3.3 987,152 - CCNA_00906 0.75 -0.4 987,152 - CCNA_00906 0.75 -0.2 987,157 - CCNA_00906 0.76 -0.6 987,172 - CCNA_00906 0.77 +0.7 987,231 - CCNA_00906 0.84 -0.0 987,242 + CCNA_00906 0.85 -1.6 987,247 - CCNA_00906 0.85 +0.0 987,259 + CCNA_00906 0.87 -1.1 987,259 + CCNA_00906 0.87 -2.6 987,259 + CCNA_00906 0.87 -1.1 987,267 - CCNA_00906 0.88 -0.7 987,267 - CCNA_00906 0.88 -1.1 987,267 - CCNA_00906 0.88 -0.3 987,267 - CCNA_00906 0.88 -0.9 987,282 - CCNA_00906 0.89 -0.1 987,282 - CCNA_00906 0.89 -1.5 987,282 - CCNA_00906 0.89 -0.9 987,301 + -1.6 987,305 + -0.6 987,305 + -0.9 987,305 + +1.3 987,310 + +0.1 987,313 - -0.4 987,322 + -0.6 987,330 - +0.7 987,359 + -0.7 987,372 - -0.8 987,374 + -1.7 987,405 + -2.4 987,405 + +1.3 987,405 + +0.4 987,405 + -0.7 987,413 - -0.0 987,413 - +0.8 987,472 - CCNA_00907 0.13 -0.5 987,477 - CCNA_00907 0.14 -1.4 987,518 - CCNA_00907 0.19 +0.4 987,535 - CCNA_00907 0.22 -1.1 987,549 - CCNA_00907 0.24 +0.4 987,567 - CCNA_00907 0.26 +0.1 987,567 - CCNA_00907 0.26 -0.5 987,596 + CCNA_00907 0.30 -2.3 987,604 - CCNA_00907 0.31 -0.6 987,607 + CCNA_00907 0.32 +0.9 987,616 - CCNA_00907 0.33 +0.2 987,631 - CCNA_00907 0.35 +0.2 987,660 - CCNA_00907 0.39 -2.1 987,666 - CCNA_00907 0.40 -0.2 987,806 + CCNA_00907 0.59 -1.4 987,806 + CCNA_00907 0.59 +3.4 987,806 - CCNA_00907 0.59 -0.9 987,814 - CCNA_00907 0.60 -1.0 987,814 - CCNA_00907 0.60 -0.1 987,819 - CCNA_00907 0.61 +1.3 987,823 + CCNA_00907 0.61 -1.1 987,823 + CCNA_00907 0.61 -0.7 987,823 + CCNA_00907 0.61 +0.1 987,823 + CCNA_00907 0.61 -0.5 987,830 - CCNA_00907 0.62 -0.5 987,831 - CCNA_00907 0.62 -0.6 987,853 + CCNA_00907 0.65 -1.3 987,881 - CCNA_00907 0.69 -0.0 987,886 - CCNA_00907 0.70 -0.9 987,887 - CCNA_00907 0.70 -1.0 987,887 - CCNA_00907 0.70 -1.7 987,935 - CCNA_00907 0.77 -0.0 987,935 - CCNA_00907 0.77 -0.9 987,956 + CCNA_00907 0.79 -0.7 987,956 + CCNA_00907 0.79 +0.0 987,964 - CCNA_00907 0.81 -0.1 987,964 - CCNA_00907 0.81 -0.9 988,060 - +0.0 988,060 - -0.1 988,062 + -0.0 988,070 - -0.3 988,100 + -0.7 988,105 + -0.6 988,111 + -2.6 988,120 - +0.1 988,129 - +0.4 988,129 - -0.8 988,136 + +2.5 988,144 - +1.9 988,155 + -1.5 988,165 + CCNA_00908 0.11 -1.2 988,168 - CCNA_00908 0.11 -1.8 988,170 + CCNA_00908 0.11 -2.0 988,189 - CCNA_00908 0.13 +0.7 988,198 - CCNA_00908 0.14 -0.3 988,296 + CCNA_00908 0.22 -0.1 988,304 - CCNA_00908 0.23 +2.6 988,316 + CCNA_00908 0.24 -2.1 988,322 + CCNA_00908 0.25 -0.6 988,347 + CCNA_00908 0.27 +0.7 988,355 - CCNA_00908 0.27 -1.2 988,363 + CCNA_00908 0.28 -1.8
Or see this region's nucleotide sequence