Experiment: R2A with Nickel (II) chloride 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS23605 and CA265_RS23610 are separated by 2 nucleotides CA265_RS23610 and CA265_RS23615 overlap by 1 nucleotides CA265_RS23615 and CA265_RS23620 are separated by 8 nucleotides CA265_RS23620 and CA265_RS23625 are separated by 89 nucleotides
CA265_RS23605: CA265_RS23605 - alkaline phosphatase, at 5,767,364 to 5,768,023
_RS23605
CA265_RS23610: CA265_RS23610 - inorganic pyrophosphatase, at 5,768,026 to 5,768,577
_RS23610
CA265_RS23615: CA265_RS23615 - hemolysin, at 5,768,577 to 5,770,001
_RS23615
CA265_RS23620: CA265_RS23620 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 5,770,010 to 5,770,714
_RS23620
CA265_RS23625: CA265_RS23625 - hypothetical protein, at 5,770,804 to 5,771,424
_RS23625
Position (kb) 5768
5769
5770
5771 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5767.639 kb on - strand, within CA265_RS23605 at 5767.643 kb on + strand, within CA265_RS23605 at 5767.643 kb on + strand, within CA265_RS23605 at 5767.643 kb on + strand, within CA265_RS23605 at 5767.643 kb on + strand, within CA265_RS23605 at 5767.680 kb on - strand, within CA265_RS23605 at 5767.683 kb on + strand, within CA265_RS23605 at 5767.684 kb on - strand, within CA265_RS23605 at 5767.701 kb on + strand, within CA265_RS23605 at 5767.701 kb on - strand, within CA265_RS23605 at 5767.708 kb on + strand, within CA265_RS23605 at 5767.731 kb on + strand, within CA265_RS23605 at 5767.750 kb on + strand, within CA265_RS23605 at 5767.757 kb on - strand, within CA265_RS23605 at 5767.757 kb on - strand, within CA265_RS23605 at 5767.817 kb on + strand, within CA265_RS23605 at 5767.819 kb on + strand, within CA265_RS23605 at 5767.819 kb on + strand, within CA265_RS23605 at 5767.918 kb on + strand, within CA265_RS23605 at 5767.948 kb on + strand, within CA265_RS23605 at 5767.978 kb on + strand at 5767.978 kb on + strand at 5768.570 kb on + strand at 5768.605 kb on + strand at 5768.716 kb on + strand at 5768.717 kb on - strand at 5768.784 kb on - strand, within CA265_RS23615 at 5768.835 kb on - strand, within CA265_RS23615 at 5768.870 kb on + strand, within CA265_RS23615 at 5768.916 kb on - strand, within CA265_RS23615 at 5768.916 kb on - strand, within CA265_RS23615 at 5768.976 kb on - strand, within CA265_RS23615 at 5768.990 kb on + strand, within CA265_RS23615 at 5768.991 kb on - strand, within CA265_RS23615 at 5768.991 kb on - strand, within CA265_RS23615 at 5769.031 kb on + strand, within CA265_RS23615 at 5769.100 kb on + strand, within CA265_RS23615 at 5769.128 kb on + strand, within CA265_RS23615 at 5769.148 kb on + strand, within CA265_RS23615 at 5769.152 kb on + strand, within CA265_RS23615 at 5769.153 kb on - strand, within CA265_RS23615 at 5769.153 kb on - strand, within CA265_RS23615 at 5769.218 kb on + strand, within CA265_RS23615 at 5769.219 kb on - strand, within CA265_RS23615 at 5769.237 kb on + strand, within CA265_RS23615 at 5769.244 kb on + strand, within CA265_RS23615 at 5769.271 kb on + strand, within CA265_RS23615 at 5769.272 kb on - strand, within CA265_RS23615 at 5769.276 kb on - strand, within CA265_RS23615 at 5769.276 kb on - strand, within CA265_RS23615 at 5769.304 kb on + strand, within CA265_RS23615 at 5769.314 kb on + strand, within CA265_RS23615 at 5769.354 kb on - strand, within CA265_RS23615 at 5769.407 kb on + strand, within CA265_RS23615 at 5769.445 kb on + strand, within CA265_RS23615 at 5769.447 kb on - strand, within CA265_RS23615 at 5769.550 kb on - strand, within CA265_RS23615 at 5769.610 kb on + strand, within CA265_RS23615 at 5769.625 kb on + strand, within CA265_RS23615 at 5769.626 kb on - strand, within CA265_RS23615 at 5769.653 kb on + strand, within CA265_RS23615 at 5769.664 kb on + strand, within CA265_RS23615 at 5769.665 kb on - strand, within CA265_RS23615 at 5769.673 kb on + strand, within CA265_RS23615 at 5769.673 kb on + strand, within CA265_RS23615 at 5769.674 kb on - strand, within CA265_RS23615 at 5769.778 kb on + strand, within CA265_RS23615 at 5769.778 kb on + strand, within CA265_RS23615 at 5769.778 kb on + strand, within CA265_RS23615 at 5769.778 kb on + strand, within CA265_RS23615 at 5769.778 kb on + strand, within CA265_RS23615 at 5769.779 kb on - strand, within CA265_RS23615 at 5769.779 kb on - strand, within CA265_RS23615 at 5769.779 kb on - strand, within CA265_RS23615 at 5769.780 kb on + strand, within CA265_RS23615 at 5769.780 kb on + strand, within CA265_RS23615 at 5769.869 kb on + strand at 5769.901 kb on - strand at 5769.915 kb on - strand at 5769.984 kb on - strand at 5770.000 kb on - strand at 5770.010 kb on - strand at 5770.016 kb on - strand at 5770.023 kb on - strand at 5770.034 kb on - strand at 5770.050 kb on - strand at 5770.052 kb on - strand at 5770.052 kb on - strand at 5770.057 kb on + strand at 5770.105 kb on - strand, within CA265_RS23620 at 5770.322 kb on - strand, within CA265_RS23620 at 5770.322 kb on - strand, within CA265_RS23620 at 5770.357 kb on - strand, within CA265_RS23620 at 5770.398 kb on + strand, within CA265_RS23620 at 5770.418 kb on + strand, within CA265_RS23620 at 5770.418 kb on + strand, within CA265_RS23620 at 5770.419 kb on - strand, within CA265_RS23620 at 5770.419 kb on - strand, within CA265_RS23620 at 5770.524 kb on - strand, within CA265_RS23620 at 5770.525 kb on + strand, within CA265_RS23620 at 5770.540 kb on - strand, within CA265_RS23620 at 5770.567 kb on + strand, within CA265_RS23620 at 5770.603 kb on + strand, within CA265_RS23620 at 5770.648 kb on + strand at 5770.648 kb on + strand at 5770.649 kb on - strand at 5770.678 kb on - strand at 5770.788 kb on - strand at 5770.835 kb on - strand at 5770.850 kb on + strand at 5770.877 kb on - strand, within CA265_RS23625 at 5770.884 kb on + strand, within CA265_RS23625 at 5770.905 kb on - strand, within CA265_RS23625
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.3 mM remove 5,767,639 - CA265_RS23605 0.42 -0.0 5,767,643 + CA265_RS23605 0.42 -3.9 5,767,643 + CA265_RS23605 0.42 -3.5 5,767,643 + CA265_RS23605 0.42 -2.4 5,767,643 + CA265_RS23605 0.42 -0.9 5,767,680 - CA265_RS23605 0.48 +0.8 5,767,683 + CA265_RS23605 0.48 -2.6 5,767,684 - CA265_RS23605 0.48 -0.5 5,767,701 + CA265_RS23605 0.51 -2.4 5,767,701 - CA265_RS23605 0.51 -1.6 5,767,708 + CA265_RS23605 0.52 -2.2 5,767,731 + CA265_RS23605 0.56 -1.8 5,767,750 + CA265_RS23605 0.58 -2.8 5,767,757 - CA265_RS23605 0.60 -0.2 5,767,757 - CA265_RS23605 0.60 -1.3 5,767,817 + CA265_RS23605 0.69 -0.2 5,767,819 + CA265_RS23605 0.69 -0.2 5,767,819 + CA265_RS23605 0.69 -3.6 5,767,918 + CA265_RS23605 0.84 -3.7 5,767,948 + CA265_RS23605 0.88 -0.3 5,767,978 + -1.5 5,767,978 + +0.2 5,768,570 + +1.1 5,768,605 + +1.4 5,768,716 + +1.7 5,768,717 - -1.2 5,768,784 - CA265_RS23615 0.15 +0.0 5,768,835 - CA265_RS23615 0.18 -0.3 5,768,870 + CA265_RS23615 0.21 +1.5 5,768,916 - CA265_RS23615 0.24 +1.6 5,768,916 - CA265_RS23615 0.24 +2.5 5,768,976 - CA265_RS23615 0.28 +1.6 5,768,990 + CA265_RS23615 0.29 +1.2 5,768,991 - CA265_RS23615 0.29 +0.8 5,768,991 - CA265_RS23615 0.29 +0.9 5,769,031 + CA265_RS23615 0.32 +2.2 5,769,100 + CA265_RS23615 0.37 +1.3 5,769,128 + CA265_RS23615 0.39 +1.9 5,769,148 + CA265_RS23615 0.40 +1.5 5,769,152 + CA265_RS23615 0.40 +2.2 5,769,153 - CA265_RS23615 0.40 +1.1 5,769,153 - CA265_RS23615 0.40 +1.1 5,769,218 + CA265_RS23615 0.45 +1.5 5,769,219 - CA265_RS23615 0.45 +2.0 5,769,237 + CA265_RS23615 0.46 +1.1 5,769,244 + CA265_RS23615 0.47 +1.9 5,769,271 + CA265_RS23615 0.49 +2.0 5,769,272 - CA265_RS23615 0.49 +1.4 5,769,276 - CA265_RS23615 0.49 -0.8 5,769,276 - CA265_RS23615 0.49 +1.4 5,769,304 + CA265_RS23615 0.51 +1.4 5,769,314 + CA265_RS23615 0.52 +1.6 5,769,354 - CA265_RS23615 0.55 +1.4 5,769,407 + CA265_RS23615 0.58 +2.5 5,769,445 + CA265_RS23615 0.61 +1.5 5,769,447 - CA265_RS23615 0.61 +2.1 5,769,550 - CA265_RS23615 0.68 +1.3 5,769,610 + CA265_RS23615 0.72 +2.3 5,769,625 + CA265_RS23615 0.74 +1.8 5,769,626 - CA265_RS23615 0.74 +1.6 5,769,653 + CA265_RS23615 0.76 +2.2 5,769,664 + CA265_RS23615 0.76 +0.9 5,769,665 - CA265_RS23615 0.76 +1.8 5,769,673 + CA265_RS23615 0.77 +0.8 5,769,673 + CA265_RS23615 0.77 +1.3 5,769,674 - CA265_RS23615 0.77 +2.1 5,769,778 + CA265_RS23615 0.84 +2.0 5,769,778 + CA265_RS23615 0.84 +2.7 5,769,778 + CA265_RS23615 0.84 +1.9 5,769,778 + CA265_RS23615 0.84 +2.1 5,769,778 + CA265_RS23615 0.84 +3.1 5,769,779 - CA265_RS23615 0.84 +0.3 5,769,779 - CA265_RS23615 0.84 +1.7 5,769,779 - CA265_RS23615 0.84 +1.8 5,769,780 + CA265_RS23615 0.84 +1.4 5,769,780 + CA265_RS23615 0.84 +1.2 5,769,869 + +2.4 5,769,901 - +2.1 5,769,915 - +1.2 5,769,984 - +2.0 5,770,000 - +1.6 5,770,010 - +2.5 5,770,016 - +1.3 5,770,023 - +2.0 5,770,034 - +1.9 5,770,050 - +1.1 5,770,052 - +1.4 5,770,052 - +1.9 5,770,057 + +0.8 5,770,105 - CA265_RS23620 0.13 +1.3 5,770,322 - CA265_RS23620 0.44 +2.7 5,770,322 - CA265_RS23620 0.44 +0.1 5,770,357 - CA265_RS23620 0.49 +0.6 5,770,398 + CA265_RS23620 0.55 -0.4 5,770,418 + CA265_RS23620 0.58 +0.2 5,770,418 + CA265_RS23620 0.58 +0.1 5,770,419 - CA265_RS23620 0.58 +1.4 5,770,419 - CA265_RS23620 0.58 +1.5 5,770,524 - CA265_RS23620 0.73 +1.2 5,770,525 + CA265_RS23620 0.73 +0.4 5,770,540 - CA265_RS23620 0.75 +1.0 5,770,567 + CA265_RS23620 0.79 -0.4 5,770,603 + CA265_RS23620 0.84 +0.2 5,770,648 + +1.8 5,770,648 + +0.6 5,770,649 - +1.0 5,770,678 - +1.3 5,770,788 - +1.1 5,770,835 - -0.1 5,770,850 + +0.6 5,770,877 - CA265_RS23625 0.12 +1.4 5,770,884 + CA265_RS23625 0.13 +0.2 5,770,905 - CA265_RS23625 0.16 +0.6
Or see this region's nucleotide sequence