Experiment: R2A with Nickel (II) chloride 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS20970 and CA265_RS20975 are separated by 173 nucleotides CA265_RS20975 and CA265_RS20980 are separated by 84 nucleotides
CA265_RS20970: CA265_RS20970 - hypothetical protein, at 5,165,514 to 5,168,612
_RS20970
CA265_RS20975: CA265_RS20975 - hypothetical protein, at 5,168,786 to 5,169,109
_RS20975
CA265_RS20980: CA265_RS20980 - 6-phosphofructokinase, at 5,169,194 to 5,170,177
_RS20980
Position (kb) 5168
5169
5170 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5167.800 kb on + strand, within CA265_RS20970 at 5167.867 kb on + strand, within CA265_RS20970 at 5167.965 kb on - strand, within CA265_RS20970 at 5168.002 kb on - strand, within CA265_RS20970 at 5168.109 kb on + strand, within CA265_RS20970 at 5168.132 kb on + strand, within CA265_RS20970 at 5168.132 kb on + strand, within CA265_RS20970 at 5168.133 kb on - strand, within CA265_RS20970 at 5168.170 kb on - strand, within CA265_RS20970 at 5168.270 kb on + strand, within CA265_RS20970 at 5168.271 kb on - strand, within CA265_RS20970 at 5168.336 kb on + strand at 5168.341 kb on - strand at 5168.357 kb on + strand at 5168.357 kb on + strand at 5168.358 kb on - strand at 5168.358 kb on - strand at 5168.358 kb on - strand at 5168.358 kb on - strand at 5168.411 kb on + strand at 5168.411 kb on + strand at 5168.459 kb on + strand at 5168.475 kb on - strand at 5168.475 kb on - strand at 5168.492 kb on + strand at 5168.578 kb on - strand at 5168.657 kb on - strand at 5168.790 kb on + strand at 5168.835 kb on - strand, within CA265_RS20975 at 5168.835 kb on - strand, within CA265_RS20975 at 5168.837 kb on - strand, within CA265_RS20975 at 5168.837 kb on - strand, within CA265_RS20975 at 5168.875 kb on + strand, within CA265_RS20975 at 5168.987 kb on + strand, within CA265_RS20975 at 5168.988 kb on - strand, within CA265_RS20975 at 5169.024 kb on + strand, within CA265_RS20975 at 5169.024 kb on + strand, within CA265_RS20975 at 5169.031 kb on - strand, within CA265_RS20975 at 5169.066 kb on + strand, within CA265_RS20975 at 5169.195 kb on + strand at 5169.230 kb on - strand at 5169.331 kb on + strand, within CA265_RS20980 at 5169.398 kb on - strand, within CA265_RS20980 at 5169.442 kb on - strand, within CA265_RS20980 at 5169.442 kb on - strand, within CA265_RS20980 at 5169.532 kb on + strand, within CA265_RS20980 at 5169.552 kb on - strand, within CA265_RS20980 at 5169.565 kb on + strand, within CA265_RS20980 at 5169.580 kb on + strand, within CA265_RS20980 at 5169.662 kb on + strand, within CA265_RS20980 at 5169.701 kb on - strand, within CA265_RS20980 at 5169.712 kb on + strand, within CA265_RS20980 at 5169.784 kb on + strand, within CA265_RS20980 at 5169.790 kb on + strand, within CA265_RS20980 at 5169.791 kb on - strand, within CA265_RS20980 at 5169.851 kb on - strand, within CA265_RS20980 at 5169.912 kb on + strand, within CA265_RS20980 at 5169.989 kb on - strand at 5169.991 kb on + strand, within CA265_RS20980 at 5169.991 kb on + strand, within CA265_RS20980 at 5170.015 kb on + strand, within CA265_RS20980 at 5170.022 kb on - strand, within CA265_RS20980 at 5170.058 kb on - strand, within CA265_RS20980 at 5170.080 kb on + strand at 5170.083 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.3 mM remove 5,167,800 + CA265_RS20970 0.74 -0.0 5,167,867 + CA265_RS20970 0.76 +0.1 5,167,965 - CA265_RS20970 0.79 +0.3 5,168,002 - CA265_RS20970 0.80 -0.5 5,168,109 + CA265_RS20970 0.84 +0.4 5,168,132 + CA265_RS20970 0.84 +0.3 5,168,132 + CA265_RS20970 0.84 +0.4 5,168,133 - CA265_RS20970 0.85 -0.4 5,168,170 - CA265_RS20970 0.86 -0.2 5,168,270 + CA265_RS20970 0.89 +1.3 5,168,271 - CA265_RS20970 0.89 -0.2 5,168,336 + +1.0 5,168,341 - -1.4 5,168,357 + -1.0 5,168,357 + +0.8 5,168,358 - +0.2 5,168,358 - +0.2 5,168,358 - -0.3 5,168,358 - +0.1 5,168,411 + -0.4 5,168,411 + -1.0 5,168,459 + -0.4 5,168,475 - -0.6 5,168,475 - -0.4 5,168,492 + +0.9 5,168,578 - -0.2 5,168,657 - -0.3 5,168,790 + +2.0 5,168,835 - CA265_RS20975 0.15 +0.2 5,168,835 - CA265_RS20975 0.15 +1.3 5,168,837 - CA265_RS20975 0.16 +0.0 5,168,837 - CA265_RS20975 0.16 +0.2 5,168,875 + CA265_RS20975 0.27 +0.6 5,168,987 + CA265_RS20975 0.62 -0.0 5,168,988 - CA265_RS20975 0.62 +0.4 5,169,024 + CA265_RS20975 0.73 +0.6 5,169,024 + CA265_RS20975 0.73 +1.7 5,169,031 - CA265_RS20975 0.76 +1.1 5,169,066 + CA265_RS20975 0.86 -1.7 5,169,195 + +0.7 5,169,230 - +0.7 5,169,331 + CA265_RS20980 0.14 +1.0 5,169,398 - CA265_RS20980 0.21 -0.2 5,169,442 - CA265_RS20980 0.25 -3.2 5,169,442 - CA265_RS20980 0.25 -1.0 5,169,532 + CA265_RS20980 0.34 -0.2 5,169,552 - CA265_RS20980 0.36 +0.2 5,169,565 + CA265_RS20980 0.38 -0.2 5,169,580 + CA265_RS20980 0.39 -0.5 5,169,662 + CA265_RS20980 0.48 +1.0 5,169,701 - CA265_RS20980 0.52 -1.6 5,169,712 + CA265_RS20980 0.53 +0.3 5,169,784 + CA265_RS20980 0.60 +0.3 5,169,790 + CA265_RS20980 0.61 -0.1 5,169,791 - CA265_RS20980 0.61 +0.6 5,169,851 - CA265_RS20980 0.67 +0.4 5,169,912 + CA265_RS20980 0.73 +0.6 5,169,989 - +2.0 5,169,991 + CA265_RS20980 0.81 -0.2 5,169,991 + CA265_RS20980 0.81 +0.6 5,170,015 + CA265_RS20980 0.83 +1.2 5,170,022 - CA265_RS20980 0.84 -1.5 5,170,058 - CA265_RS20980 0.88 -0.8 5,170,080 + +0.9 5,170,083 + +0.7
Or see this region's nucleotide sequence