Experiment: R2A with Nickel (II) chloride 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS04290 and CA265_RS04295 are separated by 5 nucleotides CA265_RS04295 and CA265_RS04300 are separated by 338 nucleotides
CA265_RS04290: CA265_RS04290 - hypothetical protein, at 1,038,268 to 1,038,825
_RS04290
CA265_RS04295: CA265_RS04295 - transcriptional regulator, at 1,038,831 to 1,039,037
_RS04295
CA265_RS04300: CA265_RS04300 - succinate--CoA ligase subunit beta, at 1,039,376 to 1,040,575
_RS04300
Position (kb)
1038
1039
1040 Strain fitness (log2 ratio)
-2
-1
0
1 at 1037.840 kb on - strand at 1037.857 kb on - strand at 1037.867 kb on - strand at 1037.930 kb on - strand at 1037.955 kb on - strand at 1038.164 kb on - strand at 1038.213 kb on - strand at 1038.263 kb on + strand at 1038.306 kb on - strand at 1038.308 kb on + strand at 1038.309 kb on - strand at 1038.390 kb on + strand, within CA265_RS04290 at 1038.526 kb on + strand, within CA265_RS04290 at 1038.627 kb on - strand, within CA265_RS04290 at 1038.650 kb on + strand, within CA265_RS04290 at 1038.651 kb on - strand, within CA265_RS04290 at 1038.770 kb on + strand at 1038.822 kb on - strand at 1038.830 kb on + strand at 1038.845 kb on - strand at 1038.851 kb on - strand at 1038.912 kb on - strand, within CA265_RS04295 at 1038.994 kb on + strand, within CA265_RS04295 at 1039.013 kb on + strand, within CA265_RS04295 at 1039.162 kb on + strand at 1039.197 kb on - strand at 1039.207 kb on - strand at 1039.221 kb on + strand at 1039.225 kb on + strand at 1039.226 kb on - strand at 1039.226 kb on - strand at 1039.332 kb on - strand at 1039.378 kb on - strand at 1039.398 kb on + strand at 1039.403 kb on + strand at 1039.987 kb on - strand, within CA265_RS04300
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.3 mM remove 1,037,840 - +0.4 1,037,857 - +0.5 1,037,867 - +0.4 1,037,930 - -0.6 1,037,955 - -0.2 1,038,164 - -0.1 1,038,213 - -0.9 1,038,263 + -1.7 1,038,306 - +1.1 1,038,308 + -0.7 1,038,309 - +0.7 1,038,390 + CA265_RS04290 0.22 -2.0 1,038,526 + CA265_RS04290 0.46 -1.2 1,038,627 - CA265_RS04290 0.64 -0.1 1,038,650 + CA265_RS04290 0.68 +0.9 1,038,651 - CA265_RS04290 0.69 +0.5 1,038,770 + -0.2 1,038,822 - +0.0 1,038,830 + -2.6 1,038,845 - -0.7 1,038,851 - -1.1 1,038,912 - CA265_RS04295 0.39 -0.5 1,038,994 + CA265_RS04295 0.79 -1.9 1,039,013 + CA265_RS04295 0.88 -0.3 1,039,162 + -0.1 1,039,197 - +0.5 1,039,207 - -0.1 1,039,221 + +0.2 1,039,225 + -0.3 1,039,226 - +0.1 1,039,226 - +0.2 1,039,332 - -0.6 1,039,378 - +0.2 1,039,398 + -0.3 1,039,403 + -2.5 1,039,987 - CA265_RS04300 0.51 +0.4
Or see this region's nucleotide sequence