Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS03170

Experiment: R2A with Nickel (II) chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS03160 and CA265_RS03165 are separated by 115 nucleotidesCA265_RS03165 and CA265_RS03170 are separated by 50 nucleotidesCA265_RS03170 and CA265_RS03175 are separated by 113 nucleotides CA265_RS03160: CA265_RS03160 - hydrolase, at 780,789 to 781,433 _RS03160 CA265_RS03165: CA265_RS03165 - hypothetical protein, at 781,549 to 781,923 _RS03165 CA265_RS03170: CA265_RS03170 - short-chain dehydrogenase, at 781,974 to 782,675 _RS03170 CA265_RS03175: CA265_RS03175 - phenylalanine 4-monooxygenase, at 782,789 to 784,570 _RS03175 Position (kb) 781 782 783Strain fitness (log2 ratio) -3 -2 -1 0 1at 781.018 kb on + strand, within CA265_RS03160at 781.072 kb on + strand, within CA265_RS03160at 781.072 kb on + strand, within CA265_RS03160at 781.140 kb on + strand, within CA265_RS03160at 781.141 kb on - strand, within CA265_RS03160at 781.145 kb on + strand, within CA265_RS03160at 781.215 kb on - strand, within CA265_RS03160at 781.417 kb on - strandat 781.526 kb on - strandat 781.646 kb on - strand, within CA265_RS03165at 781.677 kb on + strand, within CA265_RS03165at 781.678 kb on - strand, within CA265_RS03165at 781.679 kb on + strand, within CA265_RS03165at 781.680 kb on - strand, within CA265_RS03165at 781.680 kb on - strand, within CA265_RS03165at 781.691 kb on - strand, within CA265_RS03165at 781.693 kb on - strand, within CA265_RS03165at 781.790 kb on + strand, within CA265_RS03165at 781.813 kb on - strand, within CA265_RS03165at 781.820 kb on + strand, within CA265_RS03165at 781.821 kb on - strand, within CA265_RS03165at 781.821 kb on - strand, within CA265_RS03165at 781.821 kb on - strand, within CA265_RS03165at 781.821 kb on - strand, within CA265_RS03165at 781.821 kb on - strand, within CA265_RS03165at 781.821 kb on - strand, within CA265_RS03165at 781.852 kb on - strand, within CA265_RS03165at 781.862 kb on + strand, within CA265_RS03165at 781.862 kb on + strand, within CA265_RS03165at 781.863 kb on - strand, within CA265_RS03165at 781.967 kb on - strandat 781.972 kb on + strandat 782.051 kb on - strand, within CA265_RS03170at 782.195 kb on + strand, within CA265_RS03170at 782.195 kb on + strand, within CA265_RS03170at 782.196 kb on - strand, within CA265_RS03170at 782.199 kb on + strand, within CA265_RS03170at 782.267 kb on + strand, within CA265_RS03170at 782.305 kb on - strand, within CA265_RS03170at 782.402 kb on + strand, within CA265_RS03170at 782.403 kb on - strand, within CA265_RS03170at 782.424 kb on - strand, within CA265_RS03170at 782.490 kb on + strand, within CA265_RS03170at 782.511 kb on + strand, within CA265_RS03170at 782.532 kb on - strand, within CA265_RS03170at 782.558 kb on + strand, within CA265_RS03170at 782.665 kb on - strandat 782.743 kb on - strandat 782.922 kb on + strandat 782.932 kb on + strandat 782.993 kb on - strand, within CA265_RS03175at 783.065 kb on + strand, within CA265_RS03175at 783.066 kb on - strand, within CA265_RS03175at 783.128 kb on + strand, within CA265_RS03175at 783.133 kb on + strand, within CA265_RS03175at 783.259 kb on + strand, within CA265_RS03175at 783.304 kb on + strand, within CA265_RS03175at 783.304 kb on + strand, within CA265_RS03175at 783.305 kb on - strand, within CA265_RS03175at 783.305 kb on - strand, within CA265_RS03175at 783.305 kb on - strand, within CA265_RS03175at 783.307 kb on + strand, within CA265_RS03175at 783.320 kb on - strand, within CA265_RS03175at 783.327 kb on - strand, within CA265_RS03175at 783.347 kb on + strand, within CA265_RS03175at 783.423 kb on - strand, within CA265_RS03175at 783.434 kb on + strand, within CA265_RS03175at 783.491 kb on + strand, within CA265_RS03175at 783.539 kb on - strand, within CA265_RS03175at 783.559 kb on + strand, within CA265_RS03175at 783.650 kb on - strand, within CA265_RS03175

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.3 mM
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781,018 + CA265_RS03160 0.36 +0.3
781,072 + CA265_RS03160 0.44 +1.0
781,072 + CA265_RS03160 0.44 -0.0
781,140 + CA265_RS03160 0.54 +1.2
781,141 - CA265_RS03160 0.55 -0.5
781,145 + CA265_RS03160 0.55 +0.3
781,215 - CA265_RS03160 0.66 +0.2
781,417 - -0.2
781,526 - +1.1
781,646 - CA265_RS03165 0.26 -0.4
781,677 + CA265_RS03165 0.34 -0.3
781,678 - CA265_RS03165 0.34 -0.4
781,679 + CA265_RS03165 0.35 -0.3
781,680 - CA265_RS03165 0.35 -0.5
781,680 - CA265_RS03165 0.35 -0.1
781,691 - CA265_RS03165 0.38 -1.1
781,693 - CA265_RS03165 0.38 -0.3
781,790 + CA265_RS03165 0.64 -0.3
781,813 - CA265_RS03165 0.70 +0.2
781,820 + CA265_RS03165 0.72 -0.3
781,821 - CA265_RS03165 0.73 +0.5
781,821 - CA265_RS03165 0.73 -0.2
781,821 - CA265_RS03165 0.73 -1.2
781,821 - CA265_RS03165 0.73 -0.3
781,821 - CA265_RS03165 0.73 -0.6
781,821 - CA265_RS03165 0.73 -1.4
781,852 - CA265_RS03165 0.81 -1.4
781,862 + CA265_RS03165 0.83 +0.4
781,862 + CA265_RS03165 0.83 +0.9
781,863 - CA265_RS03165 0.84 -0.3
781,967 - +0.8
781,972 + +0.2
782,051 - CA265_RS03170 0.11 -1.8
782,195 + CA265_RS03170 0.31 -1.9
782,195 + CA265_RS03170 0.31 -1.3
782,196 - CA265_RS03170 0.32 -1.7
782,199 + CA265_RS03170 0.32 -0.6
782,267 + CA265_RS03170 0.42 -1.9
782,305 - CA265_RS03170 0.47 -2.7
782,402 + CA265_RS03170 0.61 -1.3
782,403 - CA265_RS03170 0.61 -0.2
782,424 - CA265_RS03170 0.64 -1.4
782,490 + CA265_RS03170 0.74 -2.0
782,511 + CA265_RS03170 0.76 -0.8
782,532 - CA265_RS03170 0.79 -3.0
782,558 + CA265_RS03170 0.83 +0.1
782,665 - -3.4
782,743 - -0.6
782,922 + +0.2
782,932 + +0.2
782,993 - CA265_RS03175 0.11 -0.5
783,065 + CA265_RS03175 0.15 -0.8
783,066 - CA265_RS03175 0.16 -0.3
783,128 + CA265_RS03175 0.19 +1.0
783,133 + CA265_RS03175 0.19 +0.4
783,259 + CA265_RS03175 0.26 -0.8
783,304 + CA265_RS03175 0.29 +0.3
783,304 + CA265_RS03175 0.29 +0.3
783,305 - CA265_RS03175 0.29 +0.5
783,305 - CA265_RS03175 0.29 -0.1
783,305 - CA265_RS03175 0.29 +0.4
783,307 + CA265_RS03175 0.29 +0.9
783,320 - CA265_RS03175 0.30 -0.5
783,327 - CA265_RS03175 0.30 +0.2
783,347 + CA265_RS03175 0.31 +0.3
783,423 - CA265_RS03175 0.36 -0.1
783,434 + CA265_RS03175 0.36 +0.7
783,491 + CA265_RS03175 0.39 +0.1
783,539 - CA265_RS03175 0.42 -0.0
783,559 + CA265_RS03175 0.43 +0.3
783,650 - CA265_RS03175 0.48 +0.8

Or see this region's nucleotide sequence