Experiment: R2A with Nickel (II) chloride 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS02525 and CA265_RS02530 are separated by 2 nucleotides CA265_RS02530 and CA265_RS02535 are separated by 2 nucleotides
CA265_RS02525: CA265_RS02525 - hypothetical protein, at 631,481 to 633,082
_RS02525
CA265_RS02530: CA265_RS02530 - hypothetical protein, at 633,085 to 634,845
_RS02530
CA265_RS02535: CA265_RS02535 - hypothetical protein, at 634,848 to 636,905
_RS02535
Position (kb) 633
634
635 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 632.133 kb on - strand, within CA265_RS02525 at 632.229 kb on + strand, within CA265_RS02525 at 632.326 kb on - strand, within CA265_RS02525 at 632.342 kb on - strand, within CA265_RS02525 at 632.342 kb on - strand, within CA265_RS02525 at 632.366 kb on + strand, within CA265_RS02525 at 632.366 kb on + strand, within CA265_RS02525 at 632.367 kb on - strand, within CA265_RS02525 at 632.399 kb on - strand, within CA265_RS02525 at 632.446 kb on - strand, within CA265_RS02525 at 632.462 kb on - strand, within CA265_RS02525 at 632.466 kb on - strand, within CA265_RS02525 at 632.579 kb on + strand, within CA265_RS02525 at 632.579 kb on + strand, within CA265_RS02525 at 632.580 kb on - strand, within CA265_RS02525 at 632.621 kb on + strand, within CA265_RS02525 at 632.656 kb on + strand, within CA265_RS02525 at 632.657 kb on - strand, within CA265_RS02525 at 632.657 kb on - strand, within CA265_RS02525 at 632.675 kb on - strand, within CA265_RS02525 at 632.867 kb on + strand, within CA265_RS02525 at 632.868 kb on - strand, within CA265_RS02525 at 632.870 kb on - strand, within CA265_RS02525 at 632.970 kb on + strand at 632.974 kb on - strand at 632.987 kb on - strand at 632.987 kb on - strand at 633.021 kb on - strand at 633.052 kb on + strand at 633.053 kb on - strand at 633.100 kb on + strand at 633.127 kb on - strand at 633.130 kb on + strand at 633.130 kb on + strand at 633.130 kb on + strand at 633.224 kb on - strand at 633.244 kb on + strand at 633.245 kb on - strand at 633.266 kb on - strand, within CA265_RS02530 at 633.323 kb on + strand, within CA265_RS02530 at 633.325 kb on + strand, within CA265_RS02530 at 633.327 kb on + strand, within CA265_RS02530 at 633.327 kb on + strand, within CA265_RS02530 at 633.349 kb on + strand, within CA265_RS02530 at 633.350 kb on - strand, within CA265_RS02530 at 633.351 kb on + strand, within CA265_RS02530 at 633.355 kb on + strand, within CA265_RS02530 at 633.479 kb on + strand, within CA265_RS02530 at 633.479 kb on + strand, within CA265_RS02530 at 633.480 kb on - strand, within CA265_RS02530 at 633.493 kb on - strand, within CA265_RS02530 at 633.498 kb on + strand, within CA265_RS02530 at 633.499 kb on - strand, within CA265_RS02530 at 633.547 kb on - strand, within CA265_RS02530 at 633.621 kb on + strand, within CA265_RS02530 at 633.621 kb on + strand, within CA265_RS02530 at 633.650 kb on + strand, within CA265_RS02530 at 633.711 kb on + strand, within CA265_RS02530 at 633.743 kb on - strand, within CA265_RS02530 at 633.771 kb on + strand, within CA265_RS02530 at 633.772 kb on + strand, within CA265_RS02530 at 633.772 kb on + strand, within CA265_RS02530 at 633.786 kb on + strand, within CA265_RS02530 at 633.787 kb on - strand, within CA265_RS02530 at 633.816 kb on + strand, within CA265_RS02530 at 633.816 kb on + strand, within CA265_RS02530 at 633.919 kb on - strand, within CA265_RS02530 at 633.920 kb on + strand, within CA265_RS02530 at 633.921 kb on - strand, within CA265_RS02530 at 633.996 kb on + strand, within CA265_RS02530 at 633.997 kb on - strand, within CA265_RS02530 at 634.008 kb on - strand, within CA265_RS02530 at 634.019 kb on - strand, within CA265_RS02530 at 634.019 kb on - strand, within CA265_RS02530 at 634.019 kb on - strand, within CA265_RS02530 at 634.026 kb on + strand, within CA265_RS02530 at 634.030 kb on - strand, within CA265_RS02530 at 634.074 kb on - strand, within CA265_RS02530 at 634.074 kb on - strand, within CA265_RS02530 at 634.217 kb on - strand, within CA265_RS02530 at 634.228 kb on - strand, within CA265_RS02530 at 634.228 kb on - strand, within CA265_RS02530 at 634.228 kb on - strand, within CA265_RS02530 at 634.234 kb on - strand, within CA265_RS02530 at 634.287 kb on + strand, within CA265_RS02530 at 634.287 kb on + strand, within CA265_RS02530 at 634.317 kb on - strand, within CA265_RS02530 at 634.325 kb on + strand, within CA265_RS02530 at 634.354 kb on - strand, within CA265_RS02530 at 634.498 kb on - strand, within CA265_RS02530 at 634.543 kb on + strand, within CA265_RS02530 at 634.544 kb on - strand, within CA265_RS02530 at 634.546 kb on + strand, within CA265_RS02530 at 634.547 kb on - strand, within CA265_RS02530 at 634.603 kb on + strand, within CA265_RS02530 at 634.644 kb on + strand at 634.655 kb on - strand, within CA265_RS02530 at 634.678 kb on + strand at 634.703 kb on + strand at 634.836 kb on + strand at 634.844 kb on - strand at 634.857 kb on - strand at 634.936 kb on + strand at 634.940 kb on + strand at 634.981 kb on - strand at 634.989 kb on + strand at 635.053 kb on - strand at 635.053 kb on - strand at 635.111 kb on + strand, within CA265_RS02535 at 635.117 kb on + strand, within CA265_RS02535 at 635.118 kb on - strand, within CA265_RS02535 at 635.125 kb on + strand, within CA265_RS02535 at 635.136 kb on + strand, within CA265_RS02535 at 635.138 kb on + strand, within CA265_RS02535 at 635.206 kb on - strand, within CA265_RS02535 at 635.249 kb on + strand, within CA265_RS02535 at 635.266 kb on + strand, within CA265_RS02535 at 635.267 kb on - strand, within CA265_RS02535 at 635.267 kb on - strand, within CA265_RS02535 at 635.267 kb on - strand, within CA265_RS02535 at 635.267 kb on - strand, within CA265_RS02535 at 635.268 kb on + strand, within CA265_RS02535 at 635.269 kb on - strand, within CA265_RS02535 at 635.272 kb on + strand, within CA265_RS02535 at 635.272 kb on + strand, within CA265_RS02535 at 635.272 kb on + strand, within CA265_RS02535 at 635.273 kb on - strand, within CA265_RS02535 at 635.389 kb on - strand, within CA265_RS02535 at 635.474 kb on - strand, within CA265_RS02535 at 635.651 kb on + strand, within CA265_RS02535 at 635.656 kb on + strand, within CA265_RS02535 at 635.664 kb on + strand, within CA265_RS02535 at 635.669 kb on + strand, within CA265_RS02535 at 635.670 kb on - strand, within CA265_RS02535 at 635.749 kb on + strand, within CA265_RS02535 at 635.750 kb on - strand, within CA265_RS02535 at 635.801 kb on - strand, within CA265_RS02535 at 635.835 kb on + strand, within CA265_RS02535 at 635.836 kb on - strand, within CA265_RS02535 at 635.836 kb on - strand, within CA265_RS02535
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.3 mM remove 632,133 - CA265_RS02525 0.41 +0.4 632,229 + CA265_RS02525 0.47 -0.2 632,326 - CA265_RS02525 0.53 -0.2 632,342 - CA265_RS02525 0.54 -0.0 632,342 - CA265_RS02525 0.54 -0.5 632,366 + CA265_RS02525 0.55 -0.3 632,366 + CA265_RS02525 0.55 -0.5 632,367 - CA265_RS02525 0.55 -0.2 632,399 - CA265_RS02525 0.57 +0.0 632,446 - CA265_RS02525 0.60 +1.1 632,462 - CA265_RS02525 0.61 -0.1 632,466 - CA265_RS02525 0.61 +0.4 632,579 + CA265_RS02525 0.69 +0.2 632,579 + CA265_RS02525 0.69 -0.6 632,580 - CA265_RS02525 0.69 -0.3 632,621 + CA265_RS02525 0.71 +0.0 632,656 + CA265_RS02525 0.73 +1.4 632,657 - CA265_RS02525 0.73 -0.5 632,657 - CA265_RS02525 0.73 -0.4 632,675 - CA265_RS02525 0.75 +0.3 632,867 + CA265_RS02525 0.87 +0.6 632,868 - CA265_RS02525 0.87 +0.4 632,870 - CA265_RS02525 0.87 +0.1 632,970 + -1.4 632,974 - -0.7 632,987 - -0.0 632,987 - -0.7 633,021 - +0.7 633,052 + +0.5 633,053 - +0.1 633,100 + +0.7 633,127 - -0.2 633,130 + +0.2 633,130 + -0.2 633,130 + +0.0 633,224 - -0.8 633,244 + -0.3 633,245 - -0.1 633,266 - CA265_RS02530 0.10 -1.9 633,323 + CA265_RS02530 0.14 +0.9 633,325 + CA265_RS02530 0.14 -0.9 633,327 + CA265_RS02530 0.14 -0.8 633,327 + CA265_RS02530 0.14 -1.3 633,349 + CA265_RS02530 0.15 -0.8 633,350 - CA265_RS02530 0.15 -0.4 633,351 + CA265_RS02530 0.15 -1.1 633,355 + CA265_RS02530 0.15 +1.1 633,479 + CA265_RS02530 0.22 -0.5 633,479 + CA265_RS02530 0.22 +0.5 633,480 - CA265_RS02530 0.22 +0.1 633,493 - CA265_RS02530 0.23 -2.7 633,498 + CA265_RS02530 0.23 -0.2 633,499 - CA265_RS02530 0.24 -1.9 633,547 - CA265_RS02530 0.26 -1.0 633,621 + CA265_RS02530 0.30 +0.3 633,621 + CA265_RS02530 0.30 -0.4 633,650 + CA265_RS02530 0.32 -0.2 633,711 + CA265_RS02530 0.36 +0.3 633,743 - CA265_RS02530 0.37 +0.3 633,771 + CA265_RS02530 0.39 -1.9 633,772 + CA265_RS02530 0.39 -0.2 633,772 + CA265_RS02530 0.39 -0.4 633,786 + CA265_RS02530 0.40 +0.5 633,787 - CA265_RS02530 0.40 +0.7 633,816 + CA265_RS02530 0.42 +0.3 633,816 + CA265_RS02530 0.42 -0.4 633,919 - CA265_RS02530 0.47 -0.9 633,920 + CA265_RS02530 0.47 -0.6 633,921 - CA265_RS02530 0.47 -0.2 633,996 + CA265_RS02530 0.52 +0.2 633,997 - CA265_RS02530 0.52 -1.9 634,008 - CA265_RS02530 0.52 +0.3 634,019 - CA265_RS02530 0.53 -0.5 634,019 - CA265_RS02530 0.53 -1.7 634,019 - CA265_RS02530 0.53 -0.4 634,026 + CA265_RS02530 0.53 -0.7 634,030 - CA265_RS02530 0.54 -0.0 634,074 - CA265_RS02530 0.56 -0.5 634,074 - CA265_RS02530 0.56 -0.5 634,217 - CA265_RS02530 0.64 +0.5 634,228 - CA265_RS02530 0.65 +0.5 634,228 - CA265_RS02530 0.65 +0.5 634,228 - CA265_RS02530 0.65 -0.8 634,234 - CA265_RS02530 0.65 -0.3 634,287 + CA265_RS02530 0.68 -0.0 634,287 + CA265_RS02530 0.68 -0.1 634,317 - CA265_RS02530 0.70 -0.0 634,325 + CA265_RS02530 0.70 +0.5 634,354 - CA265_RS02530 0.72 -0.2 634,498 - CA265_RS02530 0.80 -0.8 634,543 + CA265_RS02530 0.83 -0.4 634,544 - CA265_RS02530 0.83 +0.0 634,546 + CA265_RS02530 0.83 +1.0 634,547 - CA265_RS02530 0.83 +0.0 634,603 + CA265_RS02530 0.86 +0.7 634,644 + +2.2 634,655 - CA265_RS02530 0.89 -1.0 634,678 + +3.5 634,703 + +0.5 634,836 + -1.0 634,844 - -0.0 634,857 - -0.2 634,936 + -0.3 634,940 + -0.1 634,981 - +0.7 634,989 + -0.5 635,053 - -0.0 635,053 - -0.4 635,111 + CA265_RS02535 0.13 -0.1 635,117 + CA265_RS02535 0.13 -0.2 635,118 - CA265_RS02535 0.13 +0.5 635,125 + CA265_RS02535 0.13 -1.7 635,136 + CA265_RS02535 0.14 -0.6 635,138 + CA265_RS02535 0.14 -0.7 635,206 - CA265_RS02535 0.17 +0.4 635,249 + CA265_RS02535 0.19 -0.5 635,266 + CA265_RS02535 0.20 +1.8 635,267 - CA265_RS02535 0.20 -0.2 635,267 - CA265_RS02535 0.20 -0.2 635,267 - CA265_RS02535 0.20 -0.0 635,267 - CA265_RS02535 0.20 +0.5 635,268 + CA265_RS02535 0.20 -0.1 635,269 - CA265_RS02535 0.20 +0.8 635,272 + CA265_RS02535 0.21 +0.3 635,272 + CA265_RS02535 0.21 -0.3 635,272 + CA265_RS02535 0.21 +0.5 635,273 - CA265_RS02535 0.21 -1.0 635,389 - CA265_RS02535 0.26 -0.0 635,474 - CA265_RS02535 0.30 +0.4 635,651 + CA265_RS02535 0.39 -1.8 635,656 + CA265_RS02535 0.39 +0.9 635,664 + CA265_RS02535 0.40 -0.8 635,669 + CA265_RS02535 0.40 +0.2 635,670 - CA265_RS02535 0.40 +0.0 635,749 + CA265_RS02535 0.44 +0.2 635,750 - CA265_RS02535 0.44 -0.6 635,801 - CA265_RS02535 0.46 +0.7 635,835 + CA265_RS02535 0.48 -0.0 635,836 - CA265_RS02535 0.48 -1.2 635,836 - CA265_RS02535 0.48 +0.4
Or see this region's nucleotide sequence